usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): 39.0366956521739 51.8969130434783 60.5610869565217
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1487
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 628
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 628
Number of spheres polar: 136, nonpolar: 334, out of current total: 628
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.05704 49.01725 41.94210 61.85512 52.25597 70.35906
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 160
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 123
Spheres center of coords (x y z): 41.8284788617886 53.6316257723577 61.2761396747968
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.57553636982791
Final number of output spheres is: 45
Number of polar spheres: 8
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 23