usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 8.45325 -33.31875 10.22325 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 860 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 544 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 544 Number of spheres polar: 142, nonpolar: 244, out of current total: 544 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.53800 18.36011 -43.27834 -23.38411 0.25000 20.06142 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 214 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): 4.94191630136986 -31.4502726027397 9.73797664383561 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.97306928143623 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 8