usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 8.39475 -33.348 10.274375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 925 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 613 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 613 Number of spheres polar: 166, nonpolar: 302, out of current total: 613 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.60283 18.37172 -43.26400 -23.36929 0.33016 19.99882 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 183 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 157 Spheres center of coords (x y z): 5.23156044585987 -31.7500342675159 9.59173152866242 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.93542857860026 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 8