usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 8.34575 46.058675 42.324125
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2528
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1089
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1089
Number of spheres polar: 320, nonpolar: 634, out of current total: 1089
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.62802 18.33496 36.59668 56.04713 33.51284 52.31454
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 571
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 474
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 468
Spheres center of coords (x y z): 7.08985662393163 49.0018514316239 43.0641742094017
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.82566461307128
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 40