usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 27.4523 18.0404 5.8928 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 674 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 385 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 385 Number of spheres polar: 130, nonpolar: 195, out of current total: 385 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.47299 37.39351 8.10519 27.84369 -0.98350 15.76764 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 136 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 116 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 22 Final number of output spheres is: 22 Number of polar spheres: 1 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 10