usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -10.1878378378378 2.21567567567568 26.7315675675676 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1083 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 563 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 563 Number of spheres polar: 115, nonpolar: 332, out of current total: 563 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.09266 -4.44726 -7.77384 12.12388 16.91039 36.70267 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 205 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 175 Spheres center of coords (x y z): -12.1800653714286 0.6476616 25.7856085142857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.45974397848413 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 37