usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -10.1878378378378 2.21567567567568 26.7315675675676 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1082 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 562 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 562 Number of spheres polar: 115, nonpolar: 331, out of current total: 562 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.09266 -4.44726 -7.77384 12.12388 16.91039 36.70267 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 325 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 295 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 290 Spheres center of coords (x y z): -11.9073967241379 0.565879551724138 25.9904023448276 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.39504698439866 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 37