There are 37 ligand heavy atoms Ligand center of coords (x y z): -10.1878378378378 2.21567567567568 26.7315675675676 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12301 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7276 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7251 Number of spheres polar: 3251, nonpolar: 3475, out of current total: 7251 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.33800 0.26000 -9.78080 14.21460 14.74140 38.70860 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1094 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 574 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 563 Spheres center of coords (x y z): -13.2349136767318 1.49598721136767 27.04878330373 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.94990739357958 Final number of output spheres is: 120 Number of polar spheres: 40 Number of nonpolar spheres: 69 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 37