DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-3-08.c.bkslab.org 10-Apr-12 19:31:21 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1665216 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -23.55500 -16.38000 6.105000 grid max 12.94500 21.62000 47.10500 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 37 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 15.82232 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 2IC_1_2IC 5575 291733 37 85 483.6 1.27 E 2IC_1_2IC 3 -2.53 -36.68 4.80 -5.66 -40.07 2 2IC_1_2IC 5575 284703 37 85 147.6 1.22 E 2IC_1_2IC 3 -2.56 -36.74 4.87 -5.67 -40.09 3 2IC_1_2IC 1360 394522 37 20 386.0 1.87 E 2IC_1_2IC 2 -2.00 -33.24 4.90 -5.75 -36.09 4 2IC_1_2IC 6692 566789 37 20 1326.0 2.79 E 2IC_1_2IC 2 -2.57 -33.74 4.98 -5.73 -37.06 5 2IC_1_2IC 4281 328314 37 92 636.0 1.41 E 2IC_1_2IC 3 -3.31 -35.54 4.73 -5.62 -39.73 6 2IC_1_2IC 4281 299977 37 92 570.0 1.28 E 2IC_1_2IC 3 -3.06 -35.82 4.70 -5.64 -39.82 7 2IC_1_2IC 1362 450366 37 24 450.7 2.10 E 2IC_1_2IC 2 -3.39 -35.28 4.75 -5.56 -39.49 8 2IC_1_2IC 6686 648047 37 24 1522.0 3.00 E 2IC_1_2IC 2 -3.32 -35.36 4.68 -5.63 -39.62 9 2IC_1_2IC 5500 438549 37 200 766.0 1.61 E 2IC_1_2IC 4 -0.47 -23.66 1.66 -2.93 -25.40 10 2IC_1_2IC 4218 307819 37 96 395.3 1.27 E 2IC_1_2IC 2 0.25 -25.24 3.11 -3.12 -25.00 11 2IC_1_2IC 1360 432990 37 21 788.6 2.04 E 2IC_1_2IC 2 -5.67 -16.45 2.56 -1.99 -21.55 12 2IC_1_2IC 6699 809309 37 23 1287.6 3.13 E 2IC_1_2IC 2 -7.95 -23.29 3.29 -2.84 -30.78 13 2IC_1_2IC 7871 402328 37 138 148.8 1.46 E 2IC_1_2IC 4 -3.03 -26.23 8.42 -6.06 -26.90 14 2IC_1_2IC 3768 322383 37 67 521.6 1.27 E 2IC_1_2IC 2 1.72 -24.00 2.67 -2.79 -22.40 15 2IC_1_2IC 1362 310411 37 23 697.7 1.94 E 2IC_1_2IC 2 1.44 -19.41 1.16 -2.22 -19.03 16 2IC_1_2IC 6683 582555 37 35 519.4 2.37 E 2IC_1_2IC 2 -5.53 -21.60 2.57 -3.06 -27.62 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 820197 for debugging, time = 31.58000 solvation corrected scores: (a) 1 2IC_1_2IC score: -40.090 nathvy = 37 nconfs = 85 2 2IC_1_2IC score: -40.070 nathvy = 37 nconfs = 85 3 2IC_1_2IC score: -39.825 nathvy = 37 nconfs = 92 4 2IC_1_2IC score: -39.735 nathvy = 37 nconfs = 92 5 2IC_1_2IC score: -39.615 nathvy = 37 nconfs = 24 6 2IC_1_2IC score: -39.487 nathvy = 37 nconfs = 24 7 2IC_1_2IC score: -37.062 nathvy = 37 nconfs = 20 8 2IC_1_2IC score: -36.090 nathvy = 37 nconfs = 20 9 2IC_1_2IC score: -30.784 nathvy = 37 nconfs = 23 10 2IC_1_2IC score: -27.621 nathvy = 37 nconfs = 35 11 2IC_1_2IC score: -26.904 nathvy = 37 nconfs = 138 12 2IC_1_2IC score: -25.402 nathvy = 37 nconfs = 200 13 2IC_1_2IC score: -25.005 nathvy = 37 nconfs = 96 14 2IC_1_2IC score: -22.405 nathvy = 37 nconfs = 67 15 2IC_1_2IC score: -21.547 nathvy = 37 nconfs = 21 16 2IC_1_2IC score: -19.028 nathvy = 37 nconfs = 23 Date and Time: 10-Apr-12 19:32:24 elapsed time (sec): 31.6000