usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 34.0509090909091 40.2232727272727 36.3876363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1145 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 712 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 712 Number of spheres polar: 254, nonpolar: 337, out of current total: 712 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.08000 43.96924 30.22870 50.18501 26.50164 46.37327 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 224 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 180 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 135 Spheres center of coords (x y z): 29.8792611111111 38.5135168148148 39.2208592592593 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.04176691957628 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 11