usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 33.2435625 39.0328125 36.9921875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1057 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 611 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 611 Number of spheres polar: 216, nonpolar: 291, out of current total: 611 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.30945 43.23975 29.06099 48.95837 28.38557 46.82049 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 209 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 165 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 29.2906577697842 38.3591871223022 39.6533794244604 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.62173848924785 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 16