usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): -58.0700869565218 9.292 0.726
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1242
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 647
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 645
Number of spheres polar: 247, nonpolar: 305, out of current total: 645
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -68.06148 -48.08514 -0.59538 19.27901 -9.26427 10.72057
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 353
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 230
Spheres center of coords (x y z): -55.601122173913 9.616916 -1.19108482608696
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.03199967027084
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 23