usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 14.603 12.1635769230769 3.41838461538462 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1152 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 746 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 746 Number of spheres polar: 223, nonpolar: 375, out of current total: 746 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.65560 24.43592 2.36775 22.14066 -6.21500 13.30818 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 401 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 351 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 322 Spheres center of coords (x y z): 17.0372379503106 13.5457343478261 5.42286739130435 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48135448944462 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 26