usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 12.39512 13.1178 2.68452
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1432
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 728
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 728
Number of spheres polar: 162, nonpolar: 391, out of current total: 728
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.45175 22.35893 3.24787 23.11186 -7.24116 12.64765
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 399
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 311
Spheres center of coords (x y z): 15.7442946623794 14.5504329581994 5.18798347266881
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.86265870244561
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 25