usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 15.13025 11.3888333333333 4.13383333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1352 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 707 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 704 Number of spheres polar: 200, nonpolar: 328, out of current total: 704 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.21107 25.10224 1.39921 21.37501 -5.84221 14.01629 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 266 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 217 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 188 Spheres center of coords (x y z): 17.9405628723404 11.7529056914894 5.45206085106383 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.87901684614758 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 36