usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): -1.60082857142857 46.2217142857143 0.0210571428571429
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1455
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 888
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 887
Number of spheres polar: 248, nonpolar: 455, out of current total: 887
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.46593 8.38479 36.48048 55.96445 -9.97886 9.98972
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 475
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 401
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 380
Spheres center of coords (x y z): 0.40424752631579 47.098991368421 -0.484579289473684
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.8809100616429
Final number of output spheres is: 60
Number of polar spheres: 25
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 35