Distance from surface specified: 1.80 There are 33 ligand heavy atoms Ligand center of coords (x y z): 114.671 66.1135151515152 10.5548181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13301 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10980 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10980 Number of spheres polar: 5561, nonpolar: 4159, out of current total: 10980 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 100.67380 128.67080 52.12800 80.10160 -3.43560 23.42900 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1313 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 756 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 746 Spheres center of coords (x y z): 113.50017613941 66.3620983914208 12.9124329758713 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.481158234509 Final number of output spheres is: 200 Number of polar spheres: 125 Number of nonpolar spheres: 51 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 33