usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 114.671 66.1135151515152 10.5548181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1119 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 610 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 610 Number of spheres polar: 126, nonpolar: 337, out of current total: 610 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 104.84654 124.50464 56.12724 76.04501 0.59011 20.41792 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 172 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 112.384736959459 65.7638338513514 11.4779848648649 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.77474527055532 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 33