usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 41.39855 24.5509 110.65515
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1150
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 633
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 623
Number of spheres polar: 225, nonpolar: 272, out of current total: 623
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.44492 51.39796 14.56974 33.91700 100.66647 120.61475
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 110
Spheres center of coords (x y z): 41.7067241818182 24.0023791818182 106.928258636364
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.09650146780257
Final number of output spheres is: 45
Number of polar spheres: 6
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 20