usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 18.8910909090909 14.7219545454545 109.856363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1138 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 522 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 517 Number of spheres polar: 137, nonpolar: 264, out of current total: 517 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.09408 28.83070 4.79783 24.66709 99.90559 119.73767 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 157 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 101 Spheres center of coords (x y z): 16.8618423762376 16.084795049505 107.613168910891 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.3348066290708 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 22