usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 18.2820344827586 15.3722413793103 109.17575862069 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1339 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 624 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 618 Number of spheres polar: 157, nonpolar: 285, out of current total: 618 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.59948 27.96019 6.03089 25.35230 99.18921 119.15121 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 362 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): 17.12588765 15.02802935 106.514069 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.69298891209084 Final number of output spheres is: 60 Number of polar spheres: 6 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 29