usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 24.6330416666667 81.412875 49.0029583333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1070 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 574 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 570 Number of spheres polar: 202, nonpolar: 248, out of current total: 570 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.68705 34.61348 71.45411 91.39068 39.38007 58.83811 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 21.2837053293413 81.8579965868264 50.1160054491018 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.48244311916107 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 24