usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 18.7876785714286 15.2083571428571 108.846857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1371 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 613 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 608 Number of spheres polar: 143, nonpolar: 310, out of current total: 608 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.83505 28.68518 5.62352 25.16585 98.86800 118.80555 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 212 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 175 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): 16.6061505384615 15.6665052307692 105.856021461538 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.4063116311605 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 28