usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 18.9612083333333 14.8737083333333 109.883458333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1405 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 586 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 580 Number of spheres polar: 222, nonpolar: 238, out of current total: 580 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.00599 28.87939 5.09900 24.82491 99.92593 119.82807 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 315 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 266 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 178 Spheres center of coords (x y z): 17.0328164044944 15.0852016853932 107.069303876405 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.43544552232864 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 24