usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 17.7184117647059 14.9386176470588 108.922911764706 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1551 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 621 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 611 Number of spheres polar: 135, nonpolar: 362, out of current total: 611 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.72411 27.65477 5.22143 24.90436 98.92952 118.92232 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 342 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 290 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 237 Spheres center of coords (x y z): 18.0403479746835 14.8327642194093 106.698057468354 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.09629105929625 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 34