usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 53.8209166666667 11.772875 0.797833333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1466
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 883
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 879
Number of spheres polar: 320, nonpolar: 364, out of current total: 879
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 43.86061 63.71250 1.95439 21.70307 -9.01091 10.74378
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 467
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 394
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 324
Spheres center of coords (x y z): 52.5470490123457 14.363564845679 -0.453926728395062
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.03266827923522
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 24