usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 14.4535 -18.1975833333333 26.2922083333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1520 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 799 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 791 Number of spheres polar: 262, nonpolar: 336, out of current total: 791 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.46140 24.41044 -28.06363 -8.22106 16.33915 36.21167 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 449 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 384 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 351 Spheres center of coords (x y z): 18.31472 -16.3106661538461 26.2563906552707 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.57998880412303 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24