usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -23.5485 -12.6583846153846 72.443 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1552 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 727 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 718 Number of spheres polar: 222, nonpolar: 332, out of current total: 718 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.53078 -13.55766 -22.62716 -2.69816 62.46212 82.42969 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 417 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 354 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 279 Spheres center of coords (x y z): -20.8617732258065 -11.767917311828 73.6571813620072 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.17305280716923 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 26