usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.8080303030303 16.1182121212121 109.266787878788 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1294 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 773 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 765 Number of spheres polar: 215, nonpolar: 347, out of current total: 765 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.89572 27.72382 6.43034 26.10027 99.30000 119.24187 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 419 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 357 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 284 Spheres center of coords (x y z): 15.8527813380282 16.2948944014084 109.453496690141 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.45141041347502 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 33