DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-21.c.bkslab.org 10-Apr-12 19:31:32 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1650365 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 3.084999 -5.156000 87.86600 grid max 39.58500 31.84400 128.8660 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 35 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 13.22579 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 K30_1_3CJ 13096 199252 33 12 304.5 0.51 E K30_1_3CJ 3 -21.07 -21.16 14.69 -2.59 -30.13 2 K30_1_3CJ 13093 194974 33 12 286.1 0.49 E K30_1_3CJ 3 -19.83 -20.89 12.66 -2.21 -30.28 3 K30_1_3CJ 13094 189884 33 12 239.3 0.48 E K30_1_3CJ 3 -23.11 -21.55 16.11 -2.34 -30.88 4 K30_1_3CJ 9057 581854 33 12 1883.6 1.51 E K30_1_3CJ 2 -8.73 -29.62 8.73 -4.60 -34.22 5 K30_1_3CJ 9864 3502411 33 150 3344.1 4.04 E K30_1_3CJ 2 -6.38 -33.88 8.32 -5.37 -37.31 6 K30_1_3CJ 7937 876759 33 1152 670.2 0.89 E K30_1_3CJ 5 -8.46 -38.48 9.78 -5.53 -42.69 7 K30_1_3CJ 9303 769776 33 300 392.2 0.89 E K30_1_3CJ 2 -7.00 -36.43 8.78 -5.72 -40.38 8 K30_1_3CJ 9034 2656094 33 432 1847.0 2.76 E K30_1_3CJ 2 -22.10 -26.44 13.38 -4.04 -39.21 9 K30_1_3CJ 12945 201955 33 12 380.0 0.50 E K30_1_3CJ 3 -25.04 -21.25 14.90 -2.38 -33.77 10 K30_1_3CJ 12942 199419 33 12 372.3 0.50 E K30_1_3CJ 3 -25.16 -20.89 15.27 -2.35 -33.13 11 K30_1_3CJ 12922 194233 33 12 367.0 0.48 E K30_1_3CJ 3 -24.86 -21.47 15.12 -2.41 -33.63 12 K30_1_3CJ 9036 469175 33 12 1088.8 1.24 E K30_1_3CJ 2 -8.78 -24.18 6.00 -3.37 -30.34 13 K30_1_3CJ 9991 170066 33 12 251.1 0.43 E K30_1_3CJ 3 -12.44 -24.07 8.09 -3.68 -32.09 14 K30_1_3CJ 9992 172226 33 12 101.2 0.43 E K30_1_3CJ 3 -26.12 -19.15 16.17 -3.15 -32.25 15 K30_1_3CJ 9992 158569 33 12 279.9 0.40 E K30_1_3CJ 3 -24.08 -20.23 15.65 -3.06 -31.71 16 K30_1_3CJ 9041 700132 33 12 1526.1 1.72 E K30_1_3CJ 2 -10.55 -30.71 11.50 -4.56 -34.33 17 K30_1_3CJ 13541 206701 33 12 431.6 0.50 E K30_1_3CJ 3 -24.16 -18.04 14.86 -2.40 -29.74 18 K30_1_3CJ 13558 212285 33 12 534.0 0.52 E K30_1_3CJ 3 -25.99 -17.00 14.80 -2.77 -30.96 19 K30_1_3CJ 13542 208160 33 12 389.2 0.50 E K30_1_3CJ 3 -20.79 -21.19 14.47 -2.48 -29.99 20 K30_1_3CJ 9058 534592 33 12 1057.8 1.34 E K30_1_3CJ 2 -8.25 -31.14 8.80 -4.21 -34.81 21 K30_1_3CJ 9355 187141 33 12 217.5 0.46 E K30_1_3CJ 3 -19.25 -22.42 12.47 -2.28 -31.48 22 K30_1_3CJ 9355 186521 33 12 34.2 0.46 E K30_1_3CJ 3 -29.96 -17.32 15.88 -3.34 -34.74 23 K30_1_3CJ 9369 169463 33 12 380.2 0.42 E K30_1_3CJ 3 -10.45 -24.30 8.52 -4.03 -30.26 24 K30_1_3CJ 9040 495173 33 12 952.2 1.28 E K30_1_3CJ 2 -9.95 -29.19 10.01 -4.00 -33.13 25 K30_1_3CJ 9882 2216447 33 66 1524.0 3.47 E K30_1_3CJ 2 -7.29 -39.86 9.98 -6.09 -43.26 26 K30_1_3CJ 6564 794362 33 144 727.4 0.88 E K30_1_3CJ 4 -8.86 -38.55 10.12 -6.13 -43.42 27 K30_1_3CJ 6553 826894 33 144 753.5 0.92 E K30_1_3CJ 4 -9.86 -37.52 9.93 -5.86 -43.31 28 K30_1_3CJ 9045 1617696 33 132 1637.1 1.93 E K30_1_3CJ 2 -9.18 -37.83 10.40 -5.96 -42.56 29 K30_1_3CJ 11031 120746 33 3 201.7 0.45 E K30_1_3CJ 2 -8.56 -21.21 6.98 -3.07 -25.86 30 K30_1_3CJ 11032 120525 33 3 158.0 0.45 E K30_1_3CJ 2 -8.94 -21.02 7.00 -3.28 -26.24 31 K30_1_3CJ 11032 125536 33 3 281.2 0.46 E K30_1_3CJ 2 -8.47 -21.87 7.11 -3.07 -26.31 32 K30_1_3CJ 11031 119258 33 3 237.2 0.45 E K30_1_3CJ 2 -7.81 -21.09 6.31 -2.99 -25.59 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 2236523 for debugging, time = 32.41000 solvation corrected scores: (a) 1 K30_1_3CJ score: -43.416 nathvy = 33 nconfs = 144 2 K30_1_3CJ score: -43.310 nathvy = 33 nconfs = 144 3 K30_1_3CJ score: -43.262 nathvy = 33 nconfs = 66 4 K30_1_3CJ score: -42.691 nathvy = 33 nconfs = 1152 5 K30_1_3CJ score: -42.558 nathvy = 33 nconfs = 132 6 K30_1_3CJ score: -40.377 nathvy = 33 nconfs = 300 7 K30_1_3CJ score: -39.207 nathvy = 33 nconfs = 432 8 K30_1_3CJ score: -37.313 nathvy = 33 nconfs = 150 9 K30_1_3CJ score: -34.807 nathvy = 33 nconfs = 12 10 K30_1_3CJ score: -34.739 nathvy = 33 nconfs = 12 11 K30_1_3CJ score: -34.325 nathvy = 33 nconfs = 12 12 K30_1_3CJ score: -34.218 nathvy = 33 nconfs = 12 13 K30_1_3CJ score: -33.772 nathvy = 33 nconfs = 12 14 K30_1_3CJ score: -33.627 nathvy = 33 nconfs = 12 15 K30_1_3CJ score: -33.131 nathvy = 33 nconfs = 12 16 K30_1_3CJ score: -33.131 nathvy = 33 nconfs = 12 17 K30_1_3CJ score: -32.250 nathvy = 33 nconfs = 12 18 K30_1_3CJ score: -32.091 nathvy = 33 nconfs = 12 19 K30_1_3CJ score: -31.714 nathvy = 33 nconfs = 12 20 K30_1_3CJ score: -31.482 nathvy = 33 nconfs = 12 21 K30_1_3CJ score: -30.962 nathvy = 33 nconfs = 12 22 K30_1_3CJ score: -30.879 nathvy = 33 nconfs = 12 23 K30_1_3CJ score: -30.337 nathvy = 33 nconfs = 12 24 K30_1_3CJ score: -30.279 nathvy = 33 nconfs = 12 25 K30_1_3CJ score: -30.258 nathvy = 33 nconfs = 12 26 K30_1_3CJ score: -30.130 nathvy = 33 nconfs = 12 27 K30_1_3CJ score: -29.988 nathvy = 33 nconfs = 12 28 K30_1_3CJ score: -29.745 nathvy = 33 nconfs = 12 29 K30_1_3CJ score: -26.308 nathvy = 33 nconfs = 3 30 K30_1_3CJ score: -26.239 nathvy = 33 nconfs = 3 31 K30_1_3CJ score: -25.861 nathvy = 33 nconfs = 3 32 K30_1_3CJ score: -25.586 nathvy = 33 nconfs = 3 Date and Time: 10-Apr-12 19:32:07 elapsed time (sec): 32.4400