usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -15.4739090909091 73.8356818181818 -37.1511363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1105 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 590 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 590 Number of spheres polar: 227, nonpolar: 255, out of current total: 590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -25.36732 -5.49207 63.84224 83.74326 -46.83750 -27.18372 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 358 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 307 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): -16.1123659230769 71.1761932307693 -35.5350735 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.17322054745914 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22