Distance from surface specified: 1.80 There are 22 ligand heavy atoms Ligand center of coords (x y z): 34.1654545454546 -3.62772727272727 -28.3083181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11549 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9852 WARNING: removing a crystallographic sphere that is distance 1.74345346941064 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9851 Number of spheres polar: 5118, nonpolar: 3743, out of current total: 9851 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.16700 48.16540 -17.60140 10.34760 -42.25420 -15.44440 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1145 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 613 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 582 Spheres center of coords (x y z): 31.5159536082475 -0.527626460481099 -28.8989041237114 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.2104098686418 Final number of output spheres is: 200 Number of polar spheres: 127 Number of nonpolar spheres: 62 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21