There are 22 ligand heavy atoms Ligand center of coords (x y z): 34.1654545454546 -3.62772727272727 -28.3083181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11549 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8327 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8327 Number of spheres polar: 4485, nonpolar: 3128, out of current total: 8327 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.17740 46.16200 -15.62680 8.35640 -40.30280 -16.31020 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 951 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 495 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 479 Spheres center of coords (x y z): 32.6440150313153 -0.0631837160751565 -29.0649035490606 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.1733597020028 Final number of output spheres is: 120 Number of polar spheres: 73 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22