usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): -18.891724137931 14.6273793103448 46.0638965517241 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1452 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 688 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 688 Number of spheres polar: 284, nonpolar: 274, out of current total: 688 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -28.76804 -9.86291 4.77568 24.58258 36.07030 56.03960 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 362 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 312 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 267 Spheres center of coords (x y z): -19.1753535580524 14.8321935205993 42.5234568539326 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.86599430704045 Final number of output spheres is: 60 Number of polar spheres: 38 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29