usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 36.0233939393939 15.1305151515151 67.4934848484849 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1826 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 805 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 805 Number of spheres polar: 274, nonpolar: 298, out of current total: 805 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.04004 46.02130 5.13768 25.10863 57.51528 77.43600 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 37.0567807177034 11.7467961244019 71.7505018181818 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08678350993916 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33