Clusters to optimize: Cluster 1: A:GLN 3 A:THR 90 : HG1 A:GLN 5 Cluster 2: A:GLN 27 Cluster 3: A:GLN 30 Cluster 4: A:GLN 58 Cluster 5: A:GLN 72 Cluster 6: A:ASN 86 A:GLU 82 Cluster 7: A:GLN 101 Cluster 8: A:ASN 110 Cluster 9: B:GLN 166 B:GLN 168 Cluster 10: B:GLN 190 Cluster 11: B:GLN 218 Cluster 12: B:GLN 232 Cluster 13: B:ASN 246 B:GLU 242 Cluster 14: B:GLN 261 B:THR 259 : HG1 Cluster 15: B:ASN 270 Cluster 16: A:GLN 326 A:THR 413 : HG1 A:GLN 328 Cluster 17: A:ASN 433 Cluster 18: B:GLN 489 B:GLN 491 Cluster 19: B:GLN 513 Cluster 20: B:GLN 516 Cluster 21: B:GLN 541 Cluster 22: B:GLN 555 Cluster 23: B:ASN 569 B:GLU 565 Cluster 24: B:ASN 593 Cluster 25: A:HID 154 A:GLU 127 Cluster 26: B:HID 314 Cluster 27: B:HID 637 B:GLU 610 Cluster 28: A:SER 13 : HG Cluster 29: A:SER 16 : HG A:ASP 69 Cluster 30: A:THR 17 : HG1 Cluster 31: A:TYR 31 : HH Cluster 32: A:CYS 33 : HG Cluster 33: A:TYR 38 : HH A:GLU 145 Cluster 34: A:THR 42 : HG1 Cluster 35: A:CYS 51 : HG Cluster 36: A:CYS 81 : HG Cluster 37: A:THR 99 : HG1 Cluster 38: A:SER 117 : HG Cluster 39: A:THR 122 : HG1 Cluster 40: A:TYR 134 : HH B:GLU 276 Cluster 41: A:THR 135 : HG1 Cluster 42: A:THR 140 : HG1 Cluster 43: A:TYR 153 : HH Cluster 44: A:SER 155 : HG Cluster 45: A:TYR 161 : HH Cluster 46: B:SER 176 : HG Cluster 47: B:SER 179 : HG B:GLU 230 B:ASP 229 Cluster 48: B:THR 180 : HG1 Cluster 49: B:TYR 194 : HH Cluster 50: B:CYS 196 : HG Cluster 51: B:TYR 201 : HH B:GLU 305 Cluster 52: B:CYS 211 : HG Cluster 53: B:CYS 241 : HG Cluster 54: B:THR 250 : HG1 Cluster 55: B:SER 277 : HG Cluster 56: B:THR 282 : HG1 B:GLU 291 Cluster 57: B:TYR 294 : HH A:GLU 116 Cluster 58: B:THR 295 : HG1 Cluster 59: B:TYR 313 : HH Cluster 60: B:SER 315 : HG Cluster 61: B:TYR 321 : HH Cluster 62: A:SER 336 : HG Cluster 63: A:SER 339 : HG Cluster 64: A:THR 340 : HG1 Cluster 65: A:SER 440 : HG Cluster 66: A:THR 445 : HG1 Cluster 67: A:TYR 457 : HH B:GLU 599 Cluster 68: A:THR 458 : HG1 Cluster 69: A:SER 478 : HG Cluster 70: A:TYR 484 : HH Cluster 71: B:SER 499 : HG Cluster 72: B:SER 502 : HG B:GLU 553 B:ASP 552 B:ASP 527 Cluster 73: B:THR 503 : HG1 Cluster 74: B:TYR 517 : HH Cluster 75: B:CYS 519 : HG Cluster 76: B:TYR 524 : HH B:GLU 628 Cluster 77: B:CYS 534 : HG Cluster 78: B:CYS 564 : HG Cluster 79: B:THR 573 : HG1 Cluster 80: B:THR 582 : HG1 Cluster 81: B:SER 600 : HG Cluster 82: B:THR 605 : HG1 B:GLU 614 Cluster 83: B:TYR 617 : HH A:GLU 439 Cluster 84: B:THR 618 : HG1 Cluster 85: B:TYR 636 : HH Cluster 86: B:SER 638 : HG Cluster 87: B:TYR 644 : HH Cluster 88: A:GLU 18 B:GLU 504 Cluster 89: A:ASP 41 A:GLU 70 Cluster 90: A:GLU 46 Cluster 91: A:ASP 55 Cluster 92: A:GLU 59 Cluster 93: A:ASP 76 Cluster 94: A:GLU 79 Cluster 95: A:ASP 97 Cluster 96: A:GLU 131 Cluster 97: A:GLU 141 Cluster 98: A:GLU 143 Cluster 99: A:ASP 151 Cluster 100: B:GLU 181 A:GLU 341 Cluster 101: B:ASP 215 Cluster 102: B:GLU 219 Cluster 103: B:ASP 236 Cluster 104: B:GLU 239 Cluster 105: B:ASP 257 Cluster 106: B:GLU 303 Cluster 107: A:ASP 420 Cluster 108: A:GLU 450 Cluster 109: A:GLU 454 Cluster 110: B:GLU 529 Cluster 111: B:ASP 538 Cluster 112: B:GLU 542 Cluster 113: B:ASP 559 Cluster 114: B:GLU 562 Cluster 115: B:ASP 580 Cluster 116: B:ASP 634 Working on cluster #1... A:GLN 3 : 2 states A:THR 90 : HG1 : 5 states A:GLN 5 : 2 states Scoring exhaustively (20 potential combinations)... Cluster results: A:GLN 3 : Flip A:THR 90 : HG1 : Stagger 1 3/5 A:GLN 5 : No Flip Working on cluster #2... A:GLN 27 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 27 : Flip Working on cluster #3... A:GLN 30 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 30 : No Flip Working on cluster #4... A:GLN 58 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 58 : Flip Working on cluster #5... A:GLN 72 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 72 : No Flip Working on cluster #6... A:ASN 86 : 2 states A:GLU 82 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:ASN 86 : Flip A:GLU 82 : Charged Working on cluster #7... A:GLN 101 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 101 : No Flip Working on cluster #8... A:ASN 110 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 110 : No Flip Working on cluster #9... B:GLN 166 : 2 states B:GLN 168 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: B:GLN 166 : Flip B:GLN 168 : No Flip Working on cluster #10... B:GLN 190 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 190 : No Flip Working on cluster #11... B:GLN 218 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 218 : No Flip Working on cluster #12... B:GLN 232 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 232 : No Flip Working on cluster #13... B:ASN 246 : 2 states B:GLU 242 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: B:ASN 246 : Flip B:GLU 242 : Charged Working on cluster #14... B:GLN 261 : 2 states B:THR 259 : HG1 : 11 states Scoring exhaustively (22 potential combinations)... Cluster results: B:GLN 261 : Flip B:THR 259 : HG1 : Orientation 3/11 Working on cluster #15... B:ASN 270 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 270 : No Flip Working on cluster #16... A:GLN 326 : 2 states A:THR 413 : HG1 : 5 states A:GLN 328 : 2 states Scoring exhaustively (20 potential combinations)... Cluster results: A:GLN 326 : Flip A:THR 413 : HG1 : Stagger 1 3/5 A:GLN 328 : No Flip Working on cluster #17... A:ASN 433 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 433 : Flip Working on cluster #18... B:GLN 489 : 2 states B:GLN 491 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: B:GLN 489 : Flip B:GLN 491 : No Flip Working on cluster #19... B:GLN 513 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 513 : No Flip Working on cluster #20... B:GLN 516 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 516 : No Flip Working on cluster #21... B:GLN 541 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 541 : No Flip Working on cluster #22... B:GLN 555 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 555 : No Flip Working on cluster #23... B:ASN 569 : 2 states B:GLU 565 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: B:ASN 569 : Flip B:GLU 565 : Charged Working on cluster #24... B:ASN 593 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 593 : No Flip Working on cluster #25... A:HID 154 : 6 states A:GLU 127 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: A:HID 154 : Flip HIP A:GLU 127 : Charged Working on cluster #26... B:HID 314 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: B:HID 314 : HID Working on cluster #27... B:HID 637 : 6 states B:GLU 610 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: B:HID 637 : HID B:GLU 610 : Charged Working on cluster #28... A:SER 13 : HG : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: A:SER 13 : HG : Orientation 2/10 Working on cluster #29... A:SER 16 : HG : 8 states A:ASP 69 : 3 states Scoring exhaustively (24 potential combinations)... Cluster results: A:SER 16 : HG : Stagger 3 8/8 A:ASP 69 : Charged Working on cluster #30... A:THR 17 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 17 : HG1 : Stagger 2 3/4 Working on cluster #31... A:TYR 31 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 31 : HH : Default 2 3/3 Working on cluster #32... A:CYS 33 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:CYS 33 : HG : Orientation 2/6 Working on cluster #33... A:TYR 38 : HH : 2 states A:GLU 145 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:TYR 38 : HH : Orientation 1/2 A:GLU 145 : Charged Working on cluster #34... A:THR 42 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 42 : HG1 : Stagger 1 2/4 Working on cluster #35... A:CYS 51 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 51 : HG : Stagger 1 3/5 Working on cluster #36... A:CYS 81 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 81 : HG : Stagger 1 3/5 Working on cluster #37... A:THR 99 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:THR 99 : HG1 : Orientation 6/7 Working on cluster #38... A:SER 117 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:SER 117 : HG : Stagger 1 6/8 Working on cluster #39... A:THR 122 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 122 : HG1 : Stagger 1 3/5 Working on cluster #40... A:TYR 134 : HH : 6 states B:GLU 276 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: A:TYR 134 : HH : Orientation 1/6 B:GLU 276 : Charged Working on cluster #41... A:THR 135 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 135 : HG1 : Stagger 1 2/4 Working on cluster #42... A:THR 140 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 140 : HG1 : Stagger 1 3/5 Working on cluster #43... A:TYR 153 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 153 : HH : Orientation 1/4 Working on cluster #44... A:SER 155 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:SER 155 : HG : Stagger 1 7/9 Working on cluster #45... A:TYR 161 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 161 : HH : Orientation 3/4 Working on cluster #46... B:SER 176 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: B:SER 176 : HG : Orientation 1/9 Working on cluster #47... B:SER 179 : HG : 10 states B:GLU 230 : 3 states B:ASP 229 : 3 states Scoring exhaustively (90 potential combinations)... Cluster results: B:SER 179 : HG : Orientation 6/10 B:GLU 230 : Charged B:ASP 229 : Charged Working on cluster #48... B:THR 180 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 180 : HG1 : Orientation 1/4 Working on cluster #49... B:TYR 194 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 194 : HH : Default 2 3/3 Working on cluster #50... B:CYS 196 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:CYS 196 : HG : Orientation 2/7 Working on cluster #51... B:TYR 201 : HH : 3 states B:GLU 305 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: B:TYR 201 : HH : Orientation 1/3 B:GLU 305 : Charged Working on cluster #52... B:CYS 211 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:CYS 211 : HG : Stagger 1 3/5 Working on cluster #53... B:CYS 241 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:CYS 241 : HG : Stagger 1 3/5 Working on cluster #54... B:THR 250 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 250 : HG1 : Stagger 2 4/5 Working on cluster #55... B:SER 277 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:SER 277 : HG : Stagger 1 6/8 Working on cluster #56... B:THR 282 : HG1 : 7 states B:GLU 291 : 3 states Scoring exhaustively (21 potential combinations)... Cluster results: B:THR 282 : HG1 : Stagger 2 6/7 B:GLU 291 : Charged Working on cluster #57... B:TYR 294 : HH : 5 states A:GLU 116 : 3 states Scoring exhaustively (15 potential combinations)... Cluster results: B:TYR 294 : HH : Orientation 2/5 A:GLU 116 : Charged Working on cluster #58... B:THR 295 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 295 : HG1 : Stagger 1 2/4 Working on cluster #59... B:TYR 313 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:TYR 313 : HH : Default 1 3/4 Working on cluster #60... B:SER 315 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:SER 315 : HG : Stagger 1 6/8 Working on cluster #61... B:TYR 321 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 321 : HH : Default 1 2/3 Working on cluster #62... A:SER 336 : HG : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: A:SER 336 : HG : Orientation 2/10 Working on cluster #63... A:SER 339 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:SER 339 : HG : Stagger 3 5/5 Working on cluster #64... A:THR 340 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 340 : HG1 : Stagger 2 3/4 Working on cluster #65... A:SER 440 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:SER 440 : HG : Stagger 1 6/8 Working on cluster #66... A:THR 445 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 445 : HG1 : Stagger 1 3/5 Working on cluster #67... A:TYR 457 : HH : 6 states B:GLU 599 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: A:TYR 457 : HH : Orientation 1/6 B:GLU 599 : Charged Working on cluster #68... A:THR 458 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 458 : HG1 : Stagger 1 2/4 Working on cluster #69... A:SER 478 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:SER 478 : HG : Stagger 1 7/9 Working on cluster #70... A:TYR 484 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 484 : HH : Default 1 3/4 Working on cluster #71... B:SER 499 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: B:SER 499 : HG : Orientation 1/9 Working on cluster #72... B:SER 502 : HG : 10 states B:GLU 553 : 3 states B:ASP 552 : 3 states B:ASP 527 : 3 states Scoring exhaustively (270 potential combinations)... Cluster results: B:SER 502 : HG : Orientation 6/10 B:GLU 553 : Charged B:ASP 552 : Charged B:ASP 527 : Charged Working on cluster #73... B:THR 503 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 503 : HG1 : Orientation 1/4 Working on cluster #74... B:TYR 517 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 517 : HH : Default 2 3/3 Working on cluster #75... B:CYS 519 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:CYS 519 : HG : Orientation 2/7 Working on cluster #76... B:TYR 524 : HH : 3 states B:GLU 628 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: B:TYR 524 : HH : Orientation 1/3 B:GLU 628 : Charged Working on cluster #77... B:CYS 534 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:CYS 534 : HG : Stagger 1 3/5 Working on cluster #78... B:CYS 564 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:CYS 564 : HG : Stagger 1 3/5 Working on cluster #79... B:THR 573 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 573 : HG1 : Stagger 2 4/5 Working on cluster #80... B:THR 582 : HG1 : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:THR 582 : HG1 : Orientation 5/8 Working on cluster #81... B:SER 600 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:SER 600 : HG : Stagger 1 6/8 Working on cluster #82... B:THR 605 : HG1 : 7 states B:GLU 614 : 3 states Scoring exhaustively (21 potential combinations)... Cluster results: B:THR 605 : HG1 : Stagger 2 6/7 B:GLU 614 : Charged Working on cluster #83... B:TYR 617 : HH : 5 states A:GLU 439 : 3 states Scoring exhaustively (15 potential combinations)... Cluster results: B:TYR 617 : HH : Orientation 2/5 A:GLU 439 : Charged Working on cluster #84... B:THR 618 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 618 : HG1 : Stagger 1 2/4 Working on cluster #85... B:TYR 636 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:TYR 636 : HH : Orientation 1/4 Working on cluster #86... B:SER 638 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:SER 638 : HG : Stagger 1 6/8 Working on cluster #87... B:TYR 644 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:TYR 644 : HH : Orientation 1/4 Working on cluster #88... A:GLU 18 : 3 states B:GLU 504 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:GLU 18 : Charged B:GLU 504 : Charged Working on cluster #89... A:ASP 41 : 3 states A:GLU 70 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:ASP 41 : Charged A:GLU 70 : Neutral 1 Working on cluster #90... A:GLU 46 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 46 : Charged Working on cluster #91... A:ASP 55 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 55 : Charged Working on cluster #92... A:GLU 59 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 59 : Charged Working on cluster #93... A:ASP 76 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 76 : Charged Working on cluster #94... A:GLU 79 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 79 : Charged Working on cluster #95... A:ASP 97 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 97 : Charged Working on cluster #96... A:GLU 131 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 131 : Charged Working on cluster #97... A:GLU 141 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 141 : Charged Working on cluster #98... A:GLU 143 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 143 : Charged Working on cluster #99... A:ASP 151 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 151 : Charged Working on cluster #100... B:GLU 181 : 3 states A:GLU 341 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: B:GLU 181 : Charged A:GLU 341 : Charged Working on cluster #101... B:ASP 215 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 215 : Charged Working on cluster #102... B:GLU 219 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 219 : Charged Working on cluster #103... B:ASP 236 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 236 : Charged Working on cluster #104... B:GLU 239 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 239 : Charged Working on cluster #105... B:ASP 257 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 257 : Charged Working on cluster #106... B:GLU 303 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 303 : Charged Working on cluster #107... A:ASP 420 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 420 : Charged Working on cluster #108... A:GLU 450 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 450 : Charged Working on cluster #109... A:GLU 454 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 454 : Charged Working on cluster #110... B:GLU 529 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 529 : Charged Working on cluster #111... B:ASP 538 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 538 : Charged Working on cluster #112... B:GLU 542 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 542 : Charged Working on cluster #113... B:ASP 559 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 559 : Charged Working on cluster #114... B:GLU 562 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 562 : Charged Working on cluster #115... B:ASP 580 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 580 : Charged Working on cluster #116... B:ASP 634 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 634 : Charged Total score for structure: -178.675804976 Structure extracted from file: rec-protassign.mae Output structure will be written to: rec-protassign-out.mae Complete. Output file: rec-protassign-out.mae