Clusters to optimize: Cluster 1: A:GLN 3 A:GLN 5 Cluster 2: A:GLN 27 Cluster 3: A:GLN 30 Cluster 4: A:GLN 55 Cluster 5: A:GLN 69 Cluster 6: A:ASN 83 A:GLU 79 Cluster 7: A:GLN 98 Cluster 8: A:ASN 107 Cluster 9: B:GLN 163 B:GLN 165 Cluster 10: B:GLN 187 Cluster 11: B:GLN 190 Cluster 12: B:GLN 215 Cluster 13: B:GLN 229 Cluster 14: B:ASN 243 B:GLU 239 Cluster 15: B:GLN 258 Cluster 16: B:ASN 267 Cluster 17: C:GLN 324 C:THR 408 : HG1 C:GLN 326 Cluster 18: C:GLN 348 Cluster 19: C:GLN 376 Cluster 20: C:GLN 390 Cluster 21: C:ASN 404 C:GLU 400 Cluster 22: C:GLN 419 Cluster 23: C:ASN 428 Cluster 24: D:GLN 484 D:GLN 486 Cluster 25: D:ASN 590 Cluster 26: A:HID 151 A:GLU 124 Cluster 27: B:HID 311 B:GLU 284 Cluster 28: C:HID 472 Cluster 29: A:SER 13 : HG Cluster 30: A:SER 16 : HG Cluster 31: A:THR 17 : HG1 Cluster 32: A:TYR 31 : HH Cluster 33: A:CYS 33 : HG Cluster 34: A:TYR 38 : HH A:GLU 142 Cluster 35: A:THR 42 : HG1 Cluster 36: A:CYS 48 : HG Cluster 37: A:CYS 78 : HG Cluster 38: A:THR 87 : HG1 Cluster 39: A:THR 96 : HG1 Cluster 40: A:SER 114 : HG Cluster 41: A:THR 119 : HG1 Cluster 42: A:CYS 122 : HG A:CYS 157 : HG A:CYS 154 : HG A:CYS 125 : HG Cluster 43: A:TYR 131 : HH C:GLU 434 Cluster 44: A:SER 132 : HG Cluster 45: A:THR 137 : HG1 Cluster 46: A:TYR 150 : HH Cluster 47: A:SER 152 : HG Cluster 48: A:TYR 158 : HH Cluster 49: B:SER 173 : HG Cluster 50: B:SER 176 : HG B:ASP 226 Cluster 51: B:THR 177 : HG1 Cluster 52: B:TYR 191 : HH Cluster 53: B:CYS 193 : HG Cluster 54: B:TYR 198 : HH B:GLU 302 Cluster 55: B:THR 202 : HG1 Cluster 56: B:CYS 208 : HG Cluster 57: B:CYS 238 : HG Cluster 58: B:THR 247 : HG1 Cluster 59: B:THR 256 : HG1 Cluster 60: B:SER 274 : HG Cluster 61: B:THR 279 : HG1 Cluster 62: B:CYS 282 : HG B:CYS 317 : HG B:CYS 314 : HG B:CYS 285 : HG Cluster 63: B:TYR 291 : HH D:GLU 596 Cluster 64: B:SER 292 : HG Cluster 65: B:TYR 310 : HH Cluster 66: B:SER 312 : HG Cluster 67: B:TYR 318 : HH Cluster 68: C:SER 334 : HG Cluster 69: C:SER 337 : HG C:ASP 387 Cluster 70: C:THR 338 : HG1 Cluster 71: C:TYR 352 : HH Cluster 72: C:CYS 354 : HG Cluster 73: C:TYR 359 : HH C:GLU 463 Cluster 74: C:CYS 369 : HG Cluster 75: C:CYS 399 : HG Cluster 76: C:THR 417 : HG1 Cluster 77: C:SER 435 : HG Cluster 78: C:THR 440 : HG1 C:GLU 449 Cluster 79: C:CYS 443 : HG C:CYS 478 : HG C:CYS 475 : HG C:CYS 446 : HG Cluster 80: C:TYR 452 : HH A:GLU 113 Cluster 81: C:SER 453 : HG Cluster 82: C:TYR 471 : HH Cluster 83: C:SER 473 : HG Cluster 84: C:TYR 479 : HH Cluster 85: D:SER 494 : HG Cluster 86: D:SER 497 : HG Cluster 87: D:THR 498 : HG1 Cluster 88: D:THR 570 : HG1 Cluster 89: D:SER 597 : HG Cluster 90: D:THR 602 : HG1 D:GLU 611 Cluster 91: D:CYS 605 : HG D:CYS 640 : HG D:CYS 637 : HG D:CYS 608 : HG Cluster 92: D:TYR 614 : HH B:GLU 273 Cluster 93: D:SER 615 : HG Cluster 94: D:SER 635 : HG Cluster 95: D:TYR 641 : HH Cluster 96: A:GLU 18 B:GLU 178 Cluster 97: A:ASP 41 A:GLU 67 Cluster 98: A:ASP 52 Cluster 99: A:GLU 56 Cluster 100: A:ASP 66 Cluster 101: A:ASP 73 Cluster 102: A:GLU 76 Cluster 103: A:ASP 94 Cluster 104: A:GLU 128 Cluster 105: A:GLU 138 Cluster 106: A:GLU 140 Cluster 107: A:ASP 148 Cluster 108: B:ASP 201 B:GLU 227 Cluster 109: B:ASP 212 Cluster 110: B:GLU 216 Cluster 111: B:ASP 233 Cluster 112: B:GLU 236 Cluster 113: B:ASP 254 Cluster 114: B:GLU 288 Cluster 115: B:ASP 308 Cluster 116: C:GLU 339 D:GLU 499 Cluster 117: C:ASP 362 C:GLU 388 Cluster 118: C:ASP 373 Cluster 119: C:GLU 377 Cluster 120: C:ASP 394 Cluster 121: C:GLU 397 Cluster 122: C:ASP 415 Cluster 123: C:GLU 461 Cluster 124: D:ASP 577 Cluster 125: D:GLU 607 Working on cluster #1... A:GLN 3 : 2 states A:GLN 5 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: A:GLN 3 : Flip A:GLN 5 : No Flip Working on cluster #2... A:GLN 27 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 27 : No Flip Working on cluster #3... A:GLN 30 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 30 : Flip Working on cluster #4... A:GLN 55 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 55 : No Flip Working on cluster #5... A:GLN 69 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 69 : No Flip Working on cluster #6... A:ASN 83 : 2 states A:GLU 79 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:ASN 83 : No Flip A:GLU 79 : Charged Working on cluster #7... A:GLN 98 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 98 : Flip Working on cluster #8... A:ASN 107 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 107 : No Flip Working on cluster #9... B:GLN 163 : 2 states B:GLN 165 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: B:GLN 163 : No Flip B:GLN 165 : No Flip Working on cluster #10... B:GLN 187 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 187 : No Flip Working on cluster #11... B:GLN 190 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 190 : Flip Working on cluster #12... B:GLN 215 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 215 : Flip Working on cluster #13... B:GLN 229 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 229 : No Flip Working on cluster #14... B:ASN 243 : 2 states B:GLU 239 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: B:ASN 243 : No Flip B:GLU 239 : Charged Working on cluster #15... B:GLN 258 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 258 : No Flip Working on cluster #16... B:ASN 267 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 267 : No Flip Working on cluster #17... C:GLN 324 : 2 states C:THR 408 : HG1 : 5 states C:GLN 326 : 2 states Scoring exhaustively (20 potential combinations)... Cluster results: C:GLN 324 : Flip C:THR 408 : HG1 : Stagger 1 3/5 C:GLN 326 : No Flip Working on cluster #18... C:GLN 348 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:GLN 348 : No Flip Working on cluster #19... C:GLN 376 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:GLN 376 : No Flip Working on cluster #20... C:GLN 390 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:GLN 390 : No Flip Working on cluster #21... C:ASN 404 : 2 states C:GLU 400 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: C:ASN 404 : No Flip C:GLU 400 : Charged Working on cluster #22... C:GLN 419 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:GLN 419 : No Flip Working on cluster #23... C:ASN 428 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 428 : No Flip Working on cluster #24... D:GLN 484 : 2 states D:GLN 486 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: D:GLN 484 : No Flip D:GLN 486 : No Flip Working on cluster #25... D:ASN 590 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: D:ASN 590 : Flip Working on cluster #26... A:HID 151 : 6 states A:GLU 124 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: A:HID 151 : HID A:GLU 124 : Charged Working on cluster #27... B:HID 311 : 6 states B:GLU 284 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: B:HID 311 : Flip HIP B:GLU 284 : Charged Working on cluster #28... C:HID 472 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: C:HID 472 : HID Working on cluster #29... A:SER 13 : HG : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: A:SER 13 : HG : Orientation 2/10 Working on cluster #30... A:SER 16 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:SER 16 : HG : Stagger 2 8/9 Working on cluster #31... A:THR 17 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 17 : HG1 : Stagger 2 3/4 Working on cluster #32... A:TYR 31 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 31 : HH : Orientation 1/3 Working on cluster #33... A:CYS 33 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:CYS 33 : HG : Orientation 2/6 Working on cluster #34... A:TYR 38 : HH : 2 states A:GLU 142 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:TYR 38 : HH : Orientation 1/2 A:GLU 142 : Charged Working on cluster #35... A:THR 42 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:THR 42 : HG1 : Stagger 2 5/6 Working on cluster #36... A:CYS 48 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:CYS 48 : HG : Stagger 1 5/7 Working on cluster #37... A:CYS 78 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:CYS 78 : HG : Orientation 1/6 Working on cluster #38... A:THR 87 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 87 : HG1 : Stagger 1 3/5 Working on cluster #39... A:THR 96 : HG1 : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: A:THR 96 : HG1 : Orientation 9/10 Working on cluster #40... A:SER 114 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:SER 114 : HG : Stagger 3 5/5 Working on cluster #41... A:THR 119 : HG1 : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:THR 119 : HG1 : Orientation 1/8 Working on cluster #42... A:CYS 122 : HG : 11 states A:CYS 157 : HG : 8 states A:CYS 154 : HG : 13 states A:CYS 125 : HG : 11 states Scoring via Monte Carlo (12584 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: A:CYS 122 : HG : Stagger 1 9/11 A:CYS 157 : HG : Orientation 3/8 A:CYS 154 : HG : Orientation 10/13 A:CYS 125 : HG : Stagger 3 11/11 Working on cluster #43... A:TYR 131 : HH : 5 states C:GLU 434 : 3 states Scoring exhaustively (15 potential combinations)... Cluster results: A:TYR 131 : HH : Orientation 3/5 C:GLU 434 : Charged Working on cluster #44... A:SER 132 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:SER 132 : HG : Orientation 1/6 Working on cluster #45... A:THR 137 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 137 : HG1 : Orientation 2/5 Working on cluster #46... A:TYR 150 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 150 : HH : Orientation 1/4 Working on cluster #47... A:SER 152 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:SER 152 : HG : Orientation 1/9 Working on cluster #48... A:TYR 158 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 158 : HH : Orientation 1/3 Working on cluster #49... B:SER 173 : HG : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: B:SER 173 : HG : Orientation 6/10 Working on cluster #50... B:SER 176 : HG : 10 states B:ASP 226 : 3 states Scoring exhaustively (30 potential combinations)... Cluster results: B:SER 176 : HG : Orientation 4/10 B:ASP 226 : Charged Working on cluster #51... B:THR 177 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 177 : HG1 : Stagger 2 3/4 Working on cluster #52... B:TYR 191 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 191 : HH : Orientation 1/3 Working on cluster #53... B:CYS 193 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: B:CYS 193 : HG : Orientation 2/6 Working on cluster #54... B:TYR 198 : HH : 3 states B:GLU 302 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: B:TYR 198 : HH : Orientation 1/3 B:GLU 302 : Charged Working on cluster #55... B:THR 202 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 202 : HG1 : Stagger 1 2/4 Working on cluster #56... B:CYS 208 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:CYS 208 : HG : Stagger 1 3/5 Working on cluster #57... B:CYS 238 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: B:CYS 238 : HG : Orientation 1/6 Working on cluster #58... B:THR 247 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 247 : HG1 : Stagger 1 3/5 Working on cluster #59... B:THR 256 : HG1 : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:THR 256 : HG1 : Orientation 6/8 Working on cluster #60... B:SER 274 : HG : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:SER 274 : HG : Stagger 3 3/3 Working on cluster #61... B:THR 279 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:THR 279 : HG1 : Orientation 3/7 Working on cluster #62... B:CYS 282 : HG : 11 states B:CYS 317 : HG : 8 states B:CYS 314 : HG : 12 states B:CYS 285 : HG : 11 states Scoring via Monte Carlo (11616 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: B:CYS 282 : HG : Stagger 2 10/11 B:CYS 317 : HG : Orientation 5/8 B:CYS 314 : HG : Orientation 6/12 B:CYS 285 : HG : Orientation 5/11 Working on cluster #63... B:TYR 291 : HH : 6 states D:GLU 596 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: B:TYR 291 : HH : Orientation 3/6 D:GLU 596 : Charged Working on cluster #64... B:SER 292 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: B:SER 292 : HG : Orientation 1/6 Working on cluster #65... B:TYR 310 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:TYR 310 : HH : Orientation 1/4 Working on cluster #66... B:SER 312 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: B:SER 312 : HG : Orientation 1/9 Working on cluster #67... B:TYR 318 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:TYR 318 : HH : Orientation 1/4 Working on cluster #68... C:SER 334 : HG : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: C:SER 334 : HG : Orientation 6/10 Working on cluster #69... C:SER 337 : HG : 8 states C:ASP 387 : 3 states Scoring exhaustively (24 potential combinations)... Cluster results: C:SER 337 : HG : Orientation 4/8 C:ASP 387 : Charged Working on cluster #70... C:THR 338 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: C:THR 338 : HG1 : Stagger 2 3/4 Working on cluster #71... C:TYR 352 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 352 : HH : Orientation 1/3 Working on cluster #72... C:CYS 354 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: C:CYS 354 : HG : Orientation 2/6 Working on cluster #73... C:TYR 359 : HH : 2 states C:GLU 463 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: C:TYR 359 : HH : Orientation 1/2 C:GLU 463 : Charged Working on cluster #74... C:CYS 369 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: C:CYS 369 : HG : Stagger 1 3/5 Working on cluster #75... C:CYS 399 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: C:CYS 399 : HG : Orientation 1/6 Working on cluster #76... C:THR 417 : HG1 : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: C:THR 417 : HG1 : Orientation 9/10 Working on cluster #77... C:SER 435 : HG : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:SER 435 : HG : Stagger 3 3/3 Working on cluster #78... C:THR 440 : HG1 : 9 states C:GLU 449 : 3 states Scoring exhaustively (27 potential combinations)... Cluster results: C:THR 440 : HG1 : Orientation 1/9 C:GLU 449 : Charged Working on cluster #79... C:CYS 443 : HG : 10 states C:CYS 478 : HG : 9 states C:CYS 475 : HG : 11 states C:CYS 446 : HG : 11 states Scoring via Monte Carlo (10890 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: C:CYS 443 : HG : Stagger 3 10/10 C:CYS 478 : HG : Orientation 3/9 C:CYS 475 : HG : Stagger 3 11/11 C:CYS 446 : HG : Stagger 3 11/11 Working on cluster #80... C:TYR 452 : HH : 6 states A:GLU 113 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: C:TYR 452 : HH : Orientation 6/6 A:GLU 113 : Charged Working on cluster #81... C:SER 453 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:SER 453 : HG : Orientation 1/7 Working on cluster #82... C:TYR 471 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: C:TYR 471 : HH : Orientation 1/4 Working on cluster #83... C:SER 473 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: C:SER 473 : HG : Orientation 1/9 Working on cluster #84... C:TYR 479 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 479 : HH : Orientation 1/3 Working on cluster #85... D:SER 494 : HG : 10 states Scoring exhaustively (10 potential combinations)... Cluster results: D:SER 494 : HG : Orientation 2/10 Working on cluster #86... D:SER 497 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: D:SER 497 : HG : Stagger 2 4/5 Working on cluster #87... D:THR 498 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: D:THR 498 : HG1 : Stagger 2 4/5 Working on cluster #88... D:THR 570 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: D:THR 570 : HG1 : Stagger 3 4/4 Working on cluster #89... D:SER 597 : HG : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: D:SER 597 : HG : Stagger 3 4/4 Working on cluster #90... D:THR 602 : HG1 : 8 states D:GLU 611 : 3 states Scoring exhaustively (24 potential combinations)... Cluster results: D:THR 602 : HG1 : Orientation 1/8 D:GLU 611 : Charged Working on cluster #91... D:CYS 605 : HG : 11 states D:CYS 640 : HG : 9 states D:CYS 637 : HG : 15 states D:CYS 608 : HG : 9 states Scoring via Monte Carlo (13365 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: D:CYS 605 : HG : Stagger 2 10/11 D:CYS 640 : HG : Stagger 3 9/9 D:CYS 637 : HG : Orientation 12/15 D:CYS 608 : HG : Orientation 5/9 Working on cluster #92... D:TYR 614 : HH : 6 states B:GLU 273 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: D:TYR 614 : HH : Orientation 2/6 B:GLU 273 : Charged Working on cluster #93... D:SER 615 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: D:SER 615 : HG : Stagger 1 4/6 Working on cluster #94... D:SER 635 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: D:SER 635 : HG : Stagger 1 6/8 Working on cluster #95... D:TYR 641 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: D:TYR 641 : HH : Orientation 1/4 Working on cluster #96... A:GLU 18 : 3 states B:GLU 178 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:GLU 18 : Charged B:GLU 178 : Charged Working on cluster #97... A:ASP 41 : 3 states A:GLU 67 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:ASP 41 : Charged A:GLU 67 : Charged Working on cluster #98... A:ASP 52 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 52 : Charged Working on cluster #99... A:GLU 56 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 56 : Charged Working on cluster #100... A:ASP 66 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 66 : Charged Working on cluster #101... A:ASP 73 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 73 : Charged Working on cluster #102... A:GLU 76 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 76 : Charged Working on cluster #103... A:ASP 94 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 94 : Charged Working on cluster #104... A:GLU 128 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 128 : Charged Working on cluster #105... A:GLU 138 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 138 : Charged Working on cluster #106... A:GLU 140 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 140 : Charged Working on cluster #107... A:ASP 148 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 148 : Charged Working on cluster #108... B:ASP 201 : 3 states B:GLU 227 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: B:ASP 201 : Charged B:GLU 227 : Neutral 1 Working on cluster #109... B:ASP 212 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 212 : Charged Working on cluster #110... B:GLU 216 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 216 : Charged Working on cluster #111... B:ASP 233 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 233 : Charged Working on cluster #112... B:GLU 236 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 236 : Charged Working on cluster #113... B:ASP 254 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 254 : Charged Working on cluster #114... B:GLU 288 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 288 : Charged Working on cluster #115... B:ASP 308 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 308 : Charged Working on cluster #116... C:GLU 339 : 3 states D:GLU 499 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: C:GLU 339 : Charged D:GLU 499 : Charged Working on cluster #117... C:ASP 362 : 3 states C:GLU 388 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: C:ASP 362 : Charged C:GLU 388 : Neutral 1 Working on cluster #118... C:ASP 373 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 373 : Charged Working on cluster #119... C:GLU 377 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 377 : Charged Working on cluster #120... C:ASP 394 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 394 : Charged Working on cluster #121... C:GLU 397 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 397 : Charged Working on cluster #122... C:ASP 415 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 415 : Charged Working on cluster #123... C:GLU 461 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 461 : Charged Working on cluster #124... D:ASP 577 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:ASP 577 : Charged Working on cluster #125... D:GLU 607 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:GLU 607 : Charged Total score for structure: -194.180700281 Structure extracted from file: rec-protassign.mae Output structure will be written to: rec-protassign-out.mae Complete. Output file: rec-protassign-out.mae