Distance from surface specified: 1.80 There are 17 ligand heavy atoms Ligand center of coords (x y z): -9.75835294117647 4.90758823529412 35.8812941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13519 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11824 WARNING: removing a crystallographic sphere that is distance 1.89930882165066 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.90055281431483 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11340 Number of spheres polar: 7276, nonpolar: 3272, out of current total: 11340 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -23.75540 4.22200 -8.67980 18.90620 21.92500 49.85500 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1549 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 760 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 740 Spheres center of coords (x y z): -13.1297897297297 6.14923432432432 35.7332456756757 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.6180375223546 Final number of output spheres is: 200 Number of polar spheres: 130 Number of nonpolar spheres: 65 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 15