There are 17 ligand heavy atoms Ligand center of coords (x y z): -9.75835294117647 4.90758823529412 35.8812941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13519 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9722 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9722 Number of spheres polar: 6365, nonpolar: 2735, out of current total: 9722 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.74160 2.24140 -7.07020 16.90740 23.92940 47.85780 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1146 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 633 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 595 Spheres center of coords (x y z): -13.5744426890756 4.81279294117647 35.6260823529411 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.2064664329872 Final number of output spheres is: 120 Number of polar spheres: 71 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17