Clusters to optimize: Cluster 1: A:ASN 47 Cluster 2: A:GLN 49 Cluster 3: A:ASN 69 A:GLU 66 C:ASN 583 Cluster 4: A:ASN 74 Cluster 5: A:ASN 77 Cluster 6: A:GLN 89 A:GLU 87 Cluster 7: A:ASN 100 Cluster 8: A:ASN 105 Cluster 9: A:ASN 117 Cluster 10: A:ASN 144 Cluster 11: A:ASN 165 Cluster 12: A:GLN 174 Cluster 13: A:ASN 189 A:ASP 163 Cluster 14: A:ASN 194 C:GLU 484 A:SER 197 : HG Cluster 15: A:ASN 196 C:ASN 456 Cluster 16: A:ASN 206 Cluster 17: B:ASN 268 B:GLU 270 Cluster 18: B:GLN 280 B:GLU 278 Cluster 19: B:ASN 296 Cluster 20: B:ASN 335 Cluster 21: B:GLN 365 Cluster 22: C:GLN 476 C:GLU 474 Cluster 23: C:ASN 487 Cluster 24: C:ASN 492 Cluster 25: C:ASN 504 Cluster 26: C:ASN 552 Cluster 27: C:ASN 576 Cluster 28: C:ASN 581 A:GLU 97 C:SER 584 : HG Cluster 29: A:HID 24 A:GLU 27 A:TYR 33 : HH Cluster 30: A:HID 152 A:THR 151 : HG1 A:HID 185 Cluster 31: A:HID 161 Cluster 32: A:HID 183 A:CYS 181 : HG A:CYS 146 : HG A:CYS 143 : HG A:HID 184 Cluster 33: B:HID 230 B:GLU 233 B:TYR 239 : HH B:TYR 234 : HH Cluster 34: B:HID 343 B:THR 342 : HG1 Cluster 35: C:HID 419 Cluster 36: C:HID 539 C:THR 538 : HG1 C:HID 572 Cluster 37: C:HID 570 C:CYS 568 : HG C:HID 571 Cluster 38: D:HID 772 Cluster 39: A:THR 8 : HG1 A:ASP 115 Cluster 40: A:THR 16 : HG1 A:ASP 86 A:SER 112 : HG Cluster 41: A:TYR 28 : HH Cluster 42: A:THR 42 : HG1 Cluster 43: A:SER 44 : HG Cluster 44: A:SER 50 : HG Cluster 45: A:THR 52 : HG1 Cluster 46: A:THR 54 : HG1 Cluster 47: A:SER 55 : HG Cluster 48: A:SER 58 : HG Cluster 49: A:SER 63 : HG Cluster 50: A:TYR 70 : HH Cluster 51: A:SER 73 : HG A:SER 75 : HG Cluster 52: A:THR 80 : HG1 Cluster 53: A:CYS 96 : HG A:ASP 93 Cluster 54: A:THR 131 : HG1 Cluster 55: A:TYR 132 : HH Cluster 56: A:THR 137 : HG1 Cluster 57: A:THR 140 : HG1 Cluster 58: A:SER 153 : HG Cluster 59: A:TYR 164 : HH A:GLU 121 Cluster 60: A:CYS 173 : HG Cluster 61: A:TYR 177 : HH Cluster 62: A:SER 178 : HG Cluster 63: A:TYR 192 : HH Cluster 64: A:SER 195 : HG Cluster 65: B:THR 214 : HG1 B:ASP 306 Cluster 66: B:THR 222 : HG1 B:ASP 277 B:SER 303 : HG Cluster 67: B:SER 249 : HG Cluster 68: B:TYR 261 : HH B:SER 266 : HG Cluster 69: B:THR 271 : HG1 Cluster 70: B:THR 322 : HG1 Cluster 71: B:TYR 323 : HH Cluster 72: B:THR 328 : HG1 Cluster 73: B:THR 331 : HG1 Cluster 74: B:CYS 334 : HG B:CYS 372 : HG B:CYS 337 : HG Cluster 75: B:SER 344 : HG Cluster 76: B:CYS 364 : HG Cluster 77: B:TYR 368 : HH Cluster 78: B:SER 369 : HG Cluster 79: C:THR 403 : HG1 C:ASP 502 Cluster 80: C:THR 411 : HG1 C:ASP 473 C:SER 499 : HG Cluster 81: C:TYR 428 : HH Cluster 82: C:SER 450 : HG C:GLU 453 Cluster 83: C:TYR 457 : HH Cluster 84: C:THR 467 : HG1 Cluster 85: C:CYS 483 : HG Cluster 86: C:THR 518 : HG1 Cluster 87: C:TYR 519 : HH Cluster 88: C:THR 524 : HG1 Cluster 89: C:THR 527 : HG1 Cluster 90: C:SER 540 : HG Cluster 91: C:TYR 551 : HH C:GLU 508 Cluster 92: C:TYR 579 : HH Cluster 93: C:SER 582 : HG Cluster 94: D:THR 601 : HG1 Cluster 95: D:THR 720 : HG1 Cluster 96: D:THR 726 : HG1 Cluster 97: D:THR 729 : HG1 Cluster 98: D:CYS 732 : HG D:CYS 770 : HG D:CYS 735 : HG Cluster 99: D:THR 740 : HG1 Cluster 100: A:GLU 5 Cluster 101: A:GLU 18 B:GLU 224 Cluster 102: A:ASP 30 Cluster 103: A:ASP 41 Cluster 104: A:GLU 60 Cluster 105: A:GLU 62 Cluster 106: A:ASP 78 Cluster 107: A:GLU 79 Cluster 108: A:ASP 92 Cluster 109: A:GLU 104 Cluster 110: A:ASP 134 Cluster 111: A:GLU 145 Cluster 112: A:GLU 149 Cluster 113: A:ASP 158 Cluster 114: A:ASP 166 Cluster 115: A:ASP 167 Cluster 116: A:GLU 175 Cluster 117: A:GLU 198 Cluster 118: A:GLU 199 Cluster 119: B:GLU 211 Cluster 120: B:ASP 236 Cluster 121: B:GLU 251 Cluster 122: B:ASP 269 Cluster 123: B:GLU 295 Cluster 124: B:ASP 325 Cluster 125: B:GLU 336 Cluster 126: B:GLU 340 Cluster 127: B:GLU 366 Cluster 128: C:GLU 400 Cluster 129: C:GLU 413 D:GLU 611 Cluster 130: C:GLU 449 Cluster 131: C:ASP 465 Cluster 132: C:GLU 466 Cluster 133: C:ASP 479 Cluster 134: C:ASP 480 Cluster 135: C:GLU 491 Cluster 136: C:ASP 521 Cluster 137: C:GLU 536 Cluster 138: C:GLU 585 Cluster 139: C:GLU 586 Cluster 140: D:GLU 598 Cluster 141: D:ASP 723 Cluster 142: D:GLU 738 Working on cluster #1... A:ASN 47 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 47 : No Flip Working on cluster #2... A:GLN 49 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 49 : Flip Working on cluster #3... A:ASN 69 : 2 states A:GLU 66 : 3 states C:ASN 583 : 2 states Scoring exhaustively (12 potential combinations)... Cluster results: A:ASN 69 : No Flip A:GLU 66 : Charged C:ASN 583 : No Flip Working on cluster #4... A:ASN 74 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 74 : Flip Working on cluster #5... A:ASN 77 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 77 : No Flip Working on cluster #6... A:GLN 89 : 2 states A:GLU 87 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:GLN 89 : No Flip A:GLU 87 : Charged Working on cluster #7... A:ASN 100 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 100 : No Flip Working on cluster #8... A:ASN 105 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 105 : Flip Working on cluster #9... A:ASN 117 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 117 : No Flip Working on cluster #10... A:ASN 144 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 144 : No Flip Working on cluster #11... A:ASN 165 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 165 : No Flip Working on cluster #12... A:GLN 174 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 174 : No Flip Working on cluster #13... A:ASN 189 : 2 states A:ASP 163 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:ASN 189 : No Flip A:ASP 163 : Charged Working on cluster #14... A:ASN 194 : 2 states C:GLU 484 : 3 states A:SER 197 : HG : 9 states Scoring exhaustively (54 potential combinations)... Cluster results: A:ASN 194 : No Flip C:GLU 484 : Charged A:SER 197 : HG : Orientation 2/9 Working on cluster #15... A:ASN 196 : 2 states C:ASN 456 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: A:ASN 196 : No Flip C:ASN 456 : No Flip Working on cluster #16... A:ASN 206 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 206 : No Flip Working on cluster #17... B:ASN 268 : 2 states B:GLU 270 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: B:ASN 268 : No Flip B:GLU 270 : Charged Working on cluster #18... B:GLN 280 : 2 states B:GLU 278 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: B:GLN 280 : No Flip B:GLU 278 : Charged Working on cluster #19... B:ASN 296 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 296 : Flip Working on cluster #20... B:ASN 335 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 335 : Flip Working on cluster #21... B:GLN 365 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 365 : No Flip Working on cluster #22... C:GLN 476 : 2 states C:GLU 474 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: C:GLN 476 : No Flip C:GLU 474 : Charged Working on cluster #23... C:ASN 487 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 487 : No Flip Working on cluster #24... C:ASN 492 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 492 : Flip Working on cluster #25... C:ASN 504 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 504 : No Flip Working on cluster #26... C:ASN 552 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 552 : No Flip Working on cluster #27... C:ASN 576 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 576 : Flip Working on cluster #28... C:ASN 581 : 2 states A:GLU 97 : 3 states C:SER 584 : HG : 8 states Scoring exhaustively (48 potential combinations)... Cluster results: C:ASN 581 : No Flip A:GLU 97 : Charged C:SER 584 : HG : Orientation 1/8 Working on cluster #29... A:HID 24 : 6 states A:GLU 27 : 3 states A:TYR 33 : HH : 3 states Scoring exhaustively (54 potential combinations)... Cluster results: A:HID 24 : HID A:GLU 27 : Charged A:TYR 33 : HH : Orientation 1/3 Working on cluster #30... A:HID 152 : 6 states A:THR 151 : HG1 : 10 states A:HID 185 : 6 states Scoring exhaustively (360 potential combinations)... Cluster results: A:HID 152 : HIE A:THR 151 : HG1 : Orientation 1/10 A:HID 185 : Flip HIE Working on cluster #31... A:HID 161 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:HID 161 : HIE Working on cluster #32... A:HID 183 : 6 states A:CYS 181 : HG : 11 states A:CYS 146 : HG : 12 states A:CYS 143 : HG : 9 states A:HID 184 : 6 states Scoring via Monte Carlo (42768 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: A:HID 183 : Flip HID A:CYS 181 : HG : Orientation 3/11 A:CYS 146 : HG : Orientation 6/12 A:CYS 143 : HG : Stagger 2 8/9 A:HID 184 : HIE Working on cluster #33... B:HID 230 : 6 states B:GLU 233 : 3 states B:TYR 239 : HH : 3 states B:TYR 234 : HH : 3 states Scoring exhaustively (162 potential combinations)... Cluster results: B:HID 230 : HID B:GLU 233 : Charged B:TYR 239 : HH : Orientation 1/3 B:TYR 234 : HH : Default 2 3/3 Working on cluster #34... B:HID 343 : 6 states B:THR 342 : HG1 : 8 states Scoring exhaustively (48 potential combinations)... Cluster results: B:HID 343 : HIE B:THR 342 : HG1 : Orientation 1/8 Working on cluster #35... C:HID 419 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: C:HID 419 : HID Working on cluster #36... C:HID 539 : 6 states C:THR 538 : HG1 : 10 states C:HID 572 : 6 states Scoring exhaustively (360 potential combinations)... Cluster results: C:HID 539 : HIE C:THR 538 : HG1 : Orientation 1/10 C:HID 572 : Flip HIE Working on cluster #37... C:HID 570 : 6 states C:CYS 568 : HG : 11 states C:HID 571 : 6 states Scoring exhaustively (396 potential combinations)... Cluster results: C:HID 570 : Flip HID C:CYS 568 : HG : Orientation 3/11 C:HID 571 : Flip HID Working on cluster #38... D:HID 772 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: D:HID 772 : HID Working on cluster #39... A:THR 8 : HG1 : 7 states A:ASP 115 : 3 states Scoring exhaustively (21 potential combinations)... Cluster results: A:THR 8 : HG1 : Orientation 3/7 A:ASP 115 : Charged Working on cluster #40... A:THR 16 : HG1 : 7 states A:ASP 86 : 3 states A:SER 112 : HG : 6 states Scoring exhaustively (126 potential combinations)... Cluster results: A:THR 16 : HG1 : Orientation 3/7 A:ASP 86 : Charged A:SER 112 : HG : Orientation 1/6 Working on cluster #41... A:TYR 28 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 28 : HH : Orientation 1/3 Working on cluster #42... A:THR 42 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 42 : HG1 : Orientation 2/5 Working on cluster #43... A:SER 44 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:SER 44 : HG : Orientation 5/8 Working on cluster #44... A:SER 50 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:SER 50 : HG : Stagger 1 3/5 Working on cluster #45... A:THR 52 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 52 : HG1 : Orientation 2/5 Working on cluster #46... A:THR 54 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 54 : HG1 : Orientation 2/5 Working on cluster #47... A:SER 55 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:SER 55 : HG : Orientation 3/7 Working on cluster #48... A:SER 58 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:SER 58 : HG : Orientation 1/6 Working on cluster #49... A:SER 63 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:SER 63 : HG : Orientation 7/9 Working on cluster #50... A:TYR 70 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:TYR 70 : HH : Default 2 2/2 Working on cluster #51... A:SER 73 : HG : 10 states A:SER 75 : HG : 6 states Scoring exhaustively (60 potential combinations)... Cluster results: A:SER 73 : HG : Orientation 1/10 A:SER 75 : HG : Stagger 2 5/6 Working on cluster #52... A:THR 80 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 80 : HG1 : Orientation 1/5 Working on cluster #53... A:CYS 96 : HG : 5 states A:ASP 93 : 3 states Scoring exhaustively (15 potential combinations)... Cluster results: A:CYS 96 : HG : Orientation 1/5 A:ASP 93 : Charged Working on cluster #54... A:THR 131 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:THR 131 : HG1 : Orientation 1/6 Working on cluster #55... A:TYR 132 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 132 : HH : Default 1 2/3 Working on cluster #56... A:THR 137 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:THR 137 : HG1 : Stagger 3 7/7 Working on cluster #57... A:THR 140 : HG1 : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:THR 140 : HG1 : Orientation 3/9 Working on cluster #58... A:SER 153 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:SER 153 : HG : Orientation 1/6 Working on cluster #59... A:TYR 164 : HH : 3 states A:GLU 121 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:TYR 164 : HH : Orientation 1/3 A:GLU 121 : Charged Working on cluster #60... A:CYS 173 : HG : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:CYS 173 : HG : Stagger 2 3/4 Working on cluster #61... A:TYR 177 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 177 : HH : Orientation 1/4 Working on cluster #62... A:SER 178 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:SER 178 : HG : Orientation 1/7 Working on cluster #63... A:TYR 192 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 192 : HH : Orientation 1/4 Working on cluster #64... A:SER 195 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:SER 195 : HG : Orientation 3/7 Working on cluster #65... B:THR 214 : HG1 : 8 states B:ASP 306 : 3 states Scoring exhaustively (24 potential combinations)... Cluster results: B:THR 214 : HG1 : Orientation 6/8 B:ASP 306 : Charged Working on cluster #66... B:THR 222 : HG1 : 5 states B:ASP 277 : 3 states B:SER 303 : HG : 7 states Scoring exhaustively (105 potential combinations)... Cluster results: B:THR 222 : HG1 : Orientation 1/5 B:ASP 277 : Charged B:SER 303 : HG : Orientation 2/7 Working on cluster #67... B:SER 249 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:SER 249 : HG : Orientation 1/7 Working on cluster #68... B:TYR 261 : HH : 2 states B:SER 266 : HG : 6 states Scoring exhaustively (12 potential combinations)... Cluster results: B:TYR 261 : HH : Orientation 1/2 B:SER 266 : HG : Stagger 3 6/6 Working on cluster #69... B:THR 271 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 271 : HG1 : Orientation 1/5 Working on cluster #70... B:THR 322 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 322 : HG1 : Stagger 2 4/5 Working on cluster #71... B:TYR 323 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 323 : HH : Orientation 1/3 Working on cluster #72... B:THR 328 : HG1 : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:THR 328 : HG1 : Stagger 3 8/8 Working on cluster #73... B:THR 331 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 331 : HG1 : Orientation 1/5 Working on cluster #74... B:CYS 334 : HG : 10 states B:CYS 372 : HG : 9 states B:CYS 337 : HG : 12 states Scoring exhaustively (1080 potential combinations)... Cluster results: B:CYS 334 : HG : Stagger 2 9/10 B:CYS 372 : HG : Orientation 4/9 B:CYS 337 : HG : Orientation 6/12 Working on cluster #75... B:SER 344 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:SER 344 : HG : Stagger 1 5/7 Working on cluster #76... B:CYS 364 : HG : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:CYS 364 : HG : Stagger 2 3/4 Working on cluster #77... B:TYR 368 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:TYR 368 : HH : Orientation 1/2 Working on cluster #78... B:SER 369 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:SER 369 : HG : Stagger 1 3/5 Working on cluster #79... C:THR 403 : HG1 : 7 states C:ASP 502 : 3 states Scoring exhaustively (21 potential combinations)... Cluster results: C:THR 403 : HG1 : Orientation 4/7 C:ASP 502 : Charged Working on cluster #80... C:THR 411 : HG1 : 8 states C:ASP 473 : 3 states C:SER 499 : HG : 7 states Scoring exhaustively (168 potential combinations)... Cluster results: C:THR 411 : HG1 : Orientation 2/8 C:ASP 473 : Charged C:SER 499 : HG : Orientation 2/7 Working on cluster #81... C:TYR 428 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:TYR 428 : HH : Default 2 2/2 Working on cluster #82... C:SER 450 : HG : 9 states C:GLU 453 : 3 states Scoring exhaustively (27 potential combinations)... Cluster results: C:SER 450 : HG : Orientation 2/9 C:GLU 453 : Charged Working on cluster #83... C:TYR 457 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:TYR 457 : HH : Orientation 1/2 Working on cluster #84... C:THR 467 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: C:THR 467 : HG1 : Stagger 2 3/4 Working on cluster #85... C:CYS 483 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: C:CYS 483 : HG : Stagger 1 3/5 Working on cluster #86... C:THR 518 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:THR 518 : HG1 : Orientation 1/7 Working on cluster #87... C:TYR 519 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 519 : HH : Default 1 2/3 Working on cluster #88... C:THR 524 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:THR 524 : HG1 : Stagger 3 7/7 Working on cluster #89... C:THR 527 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: C:THR 527 : HG1 : Orientation 3/5 Working on cluster #90... C:SER 540 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:SER 540 : HG : Orientation 1/7 Working on cluster #91... C:TYR 551 : HH : 3 states C:GLU 508 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: C:TYR 551 : HH : Orientation 1/3 C:GLU 508 : Charged Working on cluster #92... C:TYR 579 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 579 : HH : Orientation 1/3 Working on cluster #93... C:SER 582 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:SER 582 : HG : Orientation 3/7 Working on cluster #94... D:THR 601 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: D:THR 601 : HG1 : Stagger 3 4/4 Working on cluster #95... D:THR 720 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: D:THR 720 : HG1 : Stagger 1 3/5 Working on cluster #96... D:THR 726 : HG1 : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: D:THR 726 : HG1 : Stagger 3 8/8 Working on cluster #97... D:THR 729 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: D:THR 729 : HG1 : Orientation 2/5 Working on cluster #98... D:CYS 732 : HG : 7 states D:CYS 770 : HG : 11 states D:CYS 735 : HG : 12 states Scoring exhaustively (924 potential combinations)... Cluster results: D:CYS 732 : HG : Stagger 3 7/7 D:CYS 770 : HG : Orientation 9/11 D:CYS 735 : HG : Orientation 8/12 Working on cluster #99... D:THR 740 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: D:THR 740 : HG1 : Orientation 3/6 Working on cluster #100... A:GLU 5 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 5 : Charged Working on cluster #101... A:GLU 18 : 3 states B:GLU 224 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:GLU 18 : Charged B:GLU 224 : Charged Working on cluster #102... A:ASP 30 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 30 : Charged Working on cluster #103... A:ASP 41 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 41 : Charged Working on cluster #104... A:GLU 60 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 60 : Charged Working on cluster #105... A:GLU 62 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 62 : Charged Working on cluster #106... A:ASP 78 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 78 : Charged Working on cluster #107... A:GLU 79 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 79 : Charged Working on cluster #108... A:ASP 92 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 92 : Charged Working on cluster #109... A:GLU 104 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 104 : Charged Working on cluster #110... A:ASP 134 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 134 : Charged Working on cluster #111... A:GLU 145 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 145 : Charged Working on cluster #112... A:GLU 149 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 149 : Charged Working on cluster #113... A:ASP 158 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 158 : Charged Working on cluster #114... A:ASP 166 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 166 : Charged Working on cluster #115... A:ASP 167 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 167 : Charged Working on cluster #116... A:GLU 175 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 175 : Charged Working on cluster #117... A:GLU 198 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 198 : Charged Working on cluster #118... A:GLU 199 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 199 : Charged Working on cluster #119... B:GLU 211 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 211 : Charged Working on cluster #120... B:ASP 236 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 236 : Charged Working on cluster #121... B:GLU 251 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 251 : Charged Working on cluster #122... B:ASP 269 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 269 : Charged Working on cluster #123... B:GLU 295 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 295 : Charged Working on cluster #124... B:ASP 325 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 325 : Charged Working on cluster #125... B:GLU 336 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 336 : Charged Working on cluster #126... B:GLU 340 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 340 : Charged Working on cluster #127... B:GLU 366 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 366 : Charged Working on cluster #128... C:GLU 400 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 400 : Charged Working on cluster #129... C:GLU 413 : 3 states D:GLU 611 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: C:GLU 413 : Charged D:GLU 611 : Charged Working on cluster #130... C:GLU 449 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 449 : Charged Working on cluster #131... C:ASP 465 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 465 : Charged Working on cluster #132... C:GLU 466 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 466 : Charged Working on cluster #133... C:ASP 479 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 479 : Charged Working on cluster #134... C:ASP 480 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 480 : Charged Working on cluster #135... C:GLU 491 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 491 : Charged Working on cluster #136... C:ASP 521 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 521 : Charged Working on cluster #137... C:GLU 536 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 536 : Charged Working on cluster #138... C:GLU 585 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 585 : Charged Working on cluster #139... C:GLU 586 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 586 : Charged Working on cluster #140... D:GLU 598 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:GLU 598 : Charged Working on cluster #141... D:ASP 723 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:ASP 723 : Charged Working on cluster #142... D:GLU 738 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:GLU 738 : Charged Total score for structure: -185.56843072 Structure extracted from file: rec-protassign.mae Output structure will be written to: rec-protassign-out.mae Complete. Output file: rec-protassign-out.mae