usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 45.1871034482759 23.0570689655172 59.1652068965517
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1501
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 670
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 668
Number of spheres polar: 225, nonpolar: 281, out of current total: 668
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.31423 55.16735 13.42048 33.04571 49.40771 69.12206
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 240
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 179
Spheres center of coords (x y z): 43.2623777653632 19.4442797206704 57.2058002793296
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.07714358892647
Final number of output spheres is: 45
Number of polar spheres: 25
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 29