Clusters to optimize: Cluster 1: A:ASN 52 C:ASN 578 Cluster 2: A:ASN 57 Cluster 3: A:ASN 60 Cluster 4: A:GLN 72 Cluster 5: A:ASN 83 Cluster 6: A:ASN 88 Cluster 7: A:ASN 100 Cluster 8: A:ASN 127 Cluster 9: A:ASN 148 A:ASP 146 A:ASN 172 Cluster 10: A:GLN 157 Cluster 11: A:ASN 177 C:GLU 479 A:SER 180 : HG Cluster 12: A:ASN 179 C:ASN 451 Cluster 13: A:ASN 189 Cluster 14: B:ASN 237 B:SER 245 : HG B:SER 234 : HG B:GLN 239 Cluster 15: B:ASN 259 Cluster 16: B:ASN 264 Cluster 17: B:ASN 267 Cluster 18: B:GLN 279 B:GLU 277 B:ASP 231 Cluster 19: B:ASN 290 Cluster 20: B:ASN 295 Cluster 21: B:ASN 307 Cluster 22: B:ASN 334 Cluster 23: B:GLN 364 Cluster 24: C:GLN 471 Cluster 25: C:ASN 482 Cluster 26: C:ASN 487 Cluster 27: C:ASN 499 Cluster 28: C:ASN 547 Cluster 29: C:ASN 571 Cluster 30: C:ASN 576 A:GLU 80 C:SER 579 : HG Cluster 31: C:ASN 588 Cluster 32: D:ASN 733 Cluster 33: A:HID 24 A:GLU 27 B:THR 242 : HG1 A:TYR 33 : HH Cluster 34: A:HID 135 A:THR 134 : HG1 A:HID 168 Cluster 35: A:HID 144 Cluster 36: A:HID 166 A:GLU 128 A:CYS 164 : HG A:CYS 129 : HG A:CYS 126 : HG A:HID 167 Cluster 37: B:HID 214 B:GLU 217 B:TYR 223 : HH Cluster 38: B:HID 342 B:THR 341 : HG1 B:HID 375 Cluster 39: B:HID 373 B:CYS 371 : HG B:CYS 336 : HG B:CYS 333 : HG B:HID 374 Cluster 40: C:HID 421 Cluster 41: C:HID 534 C:THR 533 : HG1 C:HID 567 Cluster 42: C:HID 565 C:CYS 563 : HG C:CYS 528 : HG C:CYS 525 : HG C:HID 566 Cluster 43: D:HID 741 D:THR 740 : HG1 Cluster 44: D:HID 772 D:CYS 770 : HG D:CYS 735 : HG D:CYS 732 : HG D:HID 773 Cluster 45: A:THR 8 : HG1 A:ASP 98 Cluster 46: A:THR 16 : HG1 A:ASP 69 A:SER 95 : HG Cluster 47: A:TYR 28 : HH Cluster 48: A:SER 41 : HG Cluster 49: A:SER 46 : HG A:GLU 49 A:GLU 45 Cluster 50: A:TYR 53 : HH Cluster 51: A:SER 56 : HG A:SER 58 : HG Cluster 52: A:THR 63 : HG1 Cluster 53: A:CYS 79 : HG Cluster 54: A:THR 114 : HG1 Cluster 55: A:TYR 115 : HH Cluster 56: A:THR 120 : HG1 Cluster 57: A:THR 123 : HG1 Cluster 58: A:SER 136 : HG Cluster 59: A:TYR 147 : HH A:GLU 104 Cluster 60: A:CYS 156 : HG Cluster 61: A:TYR 160 : HH Cluster 62: A:SER 161 : HG Cluster 63: A:TYR 175 : HH Cluster 64: A:SER 178 : HG Cluster 65: B:THR 198 : HG1 Cluster 66: B:THR 206 : HG1 B:ASP 276 B:SER 302 : HG Cluster 67: B:TYR 218 : HH Cluster 68: B:THR 232 : HG1 Cluster 69: B:SER 240 : HG Cluster 70: B:THR 244 : HG1 Cluster 71: B:SER 248 : HG Cluster 72: B:SER 253 : HG B:GLU 256 Cluster 73: B:TYR 260 : HH Cluster 74: B:SER 263 : HG B:SER 265 : HG Cluster 75: B:THR 270 : HG1 Cluster 76: B:CYS 286 : HG Cluster 77: B:THR 321 : HG1 Cluster 78: B:TYR 322 : HH Cluster 79: B:THR 327 : HG1 Cluster 80: B:THR 330 : HG1 B:GLU 339 Cluster 81: B:SER 343 : HG Cluster 82: B:CYS 363 : HG Cluster 83: B:TYR 367 : HH Cluster 84: B:SER 368 : HG Cluster 85: C:THR 405 : HG1 C:ASP 497 Cluster 86: C:THR 413 : HG1 C:ASP 468 C:SER 494 : HG Cluster 87: C:TYR 430 : HH Cluster 88: C:SER 445 : HG Cluster 89: C:TYR 452 : HH Cluster 90: C:THR 462 : HG1 Cluster 91: C:CYS 478 : HG Cluster 92: C:THR 513 : HG1 Cluster 93: C:TYR 514 : HH Cluster 94: C:THR 519 : HG1 Cluster 95: C:THR 522 : HG1 C:GLU 531 Cluster 96: C:SER 535 : HG Cluster 97: C:TYR 546 : HH C:GLU 503 Cluster 98: C:TYR 574 : HH Cluster 99: C:SER 577 : HG Cluster 100: D:THR 597 : HG1 D:ASP 704 Cluster 101: D:SER 701 : HG Cluster 102: D:THR 720 : HG1 Cluster 103: D:TYR 721 : HH Cluster 104: D:THR 726 : HG1 Cluster 105: D:THR 729 : HG1 D:GLU 738 Cluster 106: A:GLU 5 Cluster 107: A:GLU 18 B:GLU 208 Cluster 108: A:ASP 30 Cluster 109: A:GLU 43 Cluster 110: A:ASP 61 Cluster 111: A:GLU 62 Cluster 112: A:GLU 70 Cluster 113: A:ASP 75 Cluster 114: A:ASP 76 Cluster 115: A:GLU 87 Cluster 116: A:ASP 117 Cluster 117: A:GLU 132 Cluster 118: A:ASP 141 Cluster 119: A:ASP 149 Cluster 120: A:ASP 150 Cluster 121: A:GLU 158 Cluster 122: A:GLU 181 Cluster 123: A:GLU 182 Cluster 124: B:GLU 195 Cluster 125: B:ASP 220 Cluster 126: B:GLU 250 Cluster 127: B:GLU 252 Cluster 128: B:ASP 268 Cluster 129: B:GLU 269 Cluster 130: B:ASP 282 Cluster 131: B:ASP 283 Cluster 132: B:GLU 287 Cluster 133: B:GLU 294 Cluster 134: B:ASP 305 Cluster 135: B:GLU 311 Cluster 136: B:ASP 324 Cluster 137: B:GLU 335 Cluster 138: B:GLU 365 Cluster 139: C:GLU 402 Cluster 140: C:GLU 415 D:GLU 607 Cluster 141: C:GLU 444 Cluster 142: C:GLU 448 Cluster 143: C:ASP 460 Cluster 144: C:GLU 461 Cluster 145: C:GLU 469 Cluster 146: C:ASP 474 Cluster 147: C:ASP 475 Cluster 148: C:GLU 486 Cluster 149: C:ASP 516 Cluster 150: C:GLU 580 Cluster 151: C:GLU 581 Cluster 152: D:GLU 594 Cluster 153: D:ASP 723 Working on cluster #1... A:ASN 52 : 2 states C:ASN 578 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: A:ASN 52 : Flip C:ASN 578 : No Flip Working on cluster #2... A:ASN 57 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 57 : No Flip Working on cluster #3... A:ASN 60 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 60 : No Flip Working on cluster #4... A:GLN 72 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 72 : No Flip Working on cluster #5... A:ASN 83 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 83 : No Flip Working on cluster #6... A:ASN 88 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 88 : No Flip Working on cluster #7... A:ASN 100 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 100 : No Flip Working on cluster #8... A:ASN 127 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 127 : No Flip Working on cluster #9... A:ASN 148 : 2 states A:ASP 146 : 3 states A:ASN 172 : 2 states Scoring exhaustively (12 potential combinations)... Cluster results: A:ASN 148 : No Flip A:ASP 146 : Charged A:ASN 172 : No Flip Working on cluster #10... A:GLN 157 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 157 : Flip Working on cluster #11... A:ASN 177 : 2 states C:GLU 479 : 3 states A:SER 180 : HG : 9 states Scoring exhaustively (54 potential combinations)... Cluster results: A:ASN 177 : Flip C:GLU 479 : Charged A:SER 180 : HG : Stagger 2 8/9 Working on cluster #12... A:ASN 179 : 2 states C:ASN 451 : 2 states Scoring exhaustively (4 potential combinations)... Cluster results: A:ASN 179 : No Flip C:ASN 451 : Flip Working on cluster #13... A:ASN 189 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:ASN 189 : No Flip Working on cluster #14... B:ASN 237 : 2 states B:SER 245 : HG : 9 states B:SER 234 : HG : 6 states B:GLN 239 : 2 states Scoring exhaustively (216 potential combinations)... Cluster results: B:ASN 237 : No Flip B:SER 245 : HG : Orientation 1/9 B:SER 234 : HG : Orientation 1/6 B:GLN 239 : Flip Working on cluster #15... B:ASN 259 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 259 : No Flip Working on cluster #16... B:ASN 264 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 264 : Flip Working on cluster #17... B:ASN 267 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 267 : No Flip Working on cluster #18... B:GLN 279 : 2 states B:GLU 277 : 3 states B:ASP 231 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: B:GLN 279 : No Flip B:GLU 277 : Charged B:ASP 231 : Charged Working on cluster #19... B:ASN 290 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 290 : No Flip Working on cluster #20... B:ASN 295 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 295 : No Flip Working on cluster #21... B:ASN 307 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 307 : No Flip Working on cluster #22... B:ASN 334 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:ASN 334 : No Flip Working on cluster #23... B:GLN 364 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:GLN 364 : No Flip Working on cluster #24... C:GLN 471 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:GLN 471 : No Flip Working on cluster #25... C:ASN 482 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 482 : No Flip Working on cluster #26... C:ASN 487 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 487 : No Flip Working on cluster #27... C:ASN 499 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 499 : No Flip Working on cluster #28... C:ASN 547 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 547 : Flip Working on cluster #29... C:ASN 571 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 571 : Flip Working on cluster #30... C:ASN 576 : 2 states A:GLU 80 : 3 states C:SER 579 : HG : 7 states Scoring exhaustively (42 potential combinations)... Cluster results: C:ASN 576 : No Flip A:GLU 80 : Charged C:SER 579 : HG : Orientation 2/7 Working on cluster #31... C:ASN 588 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:ASN 588 : Flip Working on cluster #32... D:ASN 733 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: D:ASN 733 : No Flip Working on cluster #33... A:HID 24 : 6 states A:GLU 27 : 3 states B:THR 242 : HG1 : 7 states A:TYR 33 : HH : 3 states Scoring exhaustively (378 potential combinations)... Cluster results: A:HID 24 : HID A:GLU 27 : Charged B:THR 242 : HG1 : Orientation 2/7 A:TYR 33 : HH : Orientation 1/3 Working on cluster #34... A:HID 135 : 6 states A:THR 134 : HG1 : 7 states A:HID 168 : 6 states Scoring exhaustively (252 potential combinations)... Cluster results: A:HID 135 : HIE A:THR 134 : HG1 : Orientation 1/7 A:HID 168 : HIE Working on cluster #35... A:HID 144 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:HID 144 : HID Working on cluster #36... A:HID 166 : 6 states A:GLU 128 : 3 states A:CYS 164 : HG : 11 states A:CYS 129 : HG : 13 states A:CYS 126 : HG : 11 states A:HID 167 : 6 states Scoring via Monte Carlo (169884 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: A:HID 166 : Flip HID A:GLU 128 : Charged A:CYS 164 : HG : Orientation 9/11 A:CYS 129 : HG : Orientation 5/13 A:CYS 126 : HG : Stagger 2 10/11 A:HID 167 : HIE Working on cluster #37... B:HID 214 : 6 states B:GLU 217 : 3 states B:TYR 223 : HH : 3 states Scoring exhaustively (54 potential combinations)... Cluster results: B:HID 214 : HID B:GLU 217 : Charged B:TYR 223 : HH : Orientation 1/3 Working on cluster #38... B:HID 342 : 6 states B:THR 341 : HG1 : 9 states B:HID 375 : 6 states Scoring exhaustively (324 potential combinations)... Cluster results: B:HID 342 : HIE B:THR 341 : HG1 : Orientation 1/9 B:HID 375 : HIE Working on cluster #39... B:HID 373 : 6 states B:CYS 371 : HG : 13 states B:CYS 336 : HG : 13 states B:CYS 333 : HG : 10 states B:HID 374 : 6 states Scoring via Monte Carlo (60840 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: B:HID 373 : Flip HID B:CYS 371 : HG : Orientation 11/13 B:CYS 336 : HG : Orientation 7/13 B:CYS 333 : HG : Stagger 2 9/10 B:HID 374 : HIE Working on cluster #40... C:HID 421 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: C:HID 421 : HID Working on cluster #41... C:HID 534 : 6 states C:THR 533 : HG1 : 8 states C:HID 567 : 6 states Scoring exhaustively (288 potential combinations)... Cluster results: C:HID 534 : HIE C:THR 533 : HG1 : Orientation 1/8 C:HID 567 : HIE Working on cluster #42... C:HID 565 : 6 states C:CYS 563 : HG : 12 states C:CYS 528 : HG : 12 states C:CYS 525 : HG : 11 states C:HID 566 : 6 states Scoring via Monte Carlo (57024 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: C:HID 565 : Flip HID C:CYS 563 : HG : Stagger 3 12/12 C:CYS 528 : HG : Orientation 3/12 C:CYS 525 : HG : Stagger 3 11/11 C:HID 566 : HIE Working on cluster #43... D:HID 741 : 6 states D:THR 740 : HG1 : 8 states Scoring exhaustively (48 potential combinations)... Cluster results: D:HID 741 : HIE D:THR 740 : HG1 : Orientation 2/8 Working on cluster #44... D:HID 772 : 6 states D:CYS 770 : HG : 12 states D:CYS 735 : HG : 13 states D:CYS 732 : HG : 9 states D:HID 773 : 6 states Scoring via Monte Carlo (50544 potential combinations)... Searching for a valid starting state... Beginning Monte Carlo sampling... Cluster results: D:HID 772 : HID D:CYS 770 : HG : Orientation 7/12 D:CYS 735 : HG : Orientation 3/13 D:CYS 732 : HG : Stagger 3 9/9 D:HID 773 : HIE Working on cluster #45... A:THR 8 : HG1 : 6 states A:ASP 98 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: A:THR 8 : HG1 : Orientation 3/6 A:ASP 98 : Charged Working on cluster #46... A:THR 16 : HG1 : 8 states A:ASP 69 : 3 states A:SER 95 : HG : 7 states Scoring exhaustively (168 potential combinations)... Cluster results: A:THR 16 : HG1 : Stagger 3 8/8 A:ASP 69 : Charged A:SER 95 : HG : Orientation 4/7 Working on cluster #47... A:TYR 28 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 28 : HH : Orientation 1/3 Working on cluster #48... A:SER 41 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:SER 41 : HG : Stagger 1 3/5 Working on cluster #49... A:SER 46 : HG : 9 states A:GLU 49 : 3 states A:GLU 45 : 3 states Scoring exhaustively (81 potential combinations)... Cluster results: A:SER 46 : HG : Stagger 3 9/9 A:GLU 49 : Charged A:GLU 45 : Charged Working on cluster #50... A:TYR 53 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 53 : HH : Orientation 1/3 Working on cluster #51... A:SER 56 : HG : 11 states A:SER 58 : HG : 7 states Scoring exhaustively (77 potential combinations)... Cluster results: A:SER 56 : HG : Orientation 6/11 A:SER 58 : HG : Stagger 2 6/7 Working on cluster #52... A:THR 63 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 63 : HG1 : Orientation 1/5 Working on cluster #53... A:CYS 79 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:CYS 79 : HG : Stagger 2 5/6 Working on cluster #54... A:THR 114 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:THR 114 : HG1 : Stagger 2 4/5 Working on cluster #55... A:TYR 115 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 115 : HH : Default 2 3/3 Working on cluster #56... A:THR 120 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:THR 120 : HG1 : Stagger 3 7/7 Working on cluster #57... A:THR 123 : HG1 : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: A:THR 123 : HG1 : Orientation 4/9 Working on cluster #58... A:SER 136 : HG : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:SER 136 : HG : Orientation 2/6 Working on cluster #59... A:TYR 147 : HH : 3 states A:GLU 104 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:TYR 147 : HH : Orientation 1/3 A:GLU 104 : Charged Working on cluster #60... A:CYS 156 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 156 : HG : Orientation 3/5 Working on cluster #61... A:TYR 160 : HH : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:TYR 160 : HH : Orientation 1/4 Working on cluster #62... A:SER 161 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:SER 161 : HG : Stagger 3 8/8 Working on cluster #63... A:TYR 175 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:TYR 175 : HH : Orientation 1/3 Working on cluster #64... A:SER 178 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: A:SER 178 : HG : Orientation 3/7 Working on cluster #65... B:THR 198 : HG1 : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: B:THR 198 : HG1 : Orientation 5/8 Working on cluster #66... B:THR 206 : HG1 : 7 states B:ASP 276 : 3 states B:SER 302 : HG : 7 states Scoring exhaustively (147 potential combinations)... Cluster results: B:THR 206 : HG1 : Orientation 2/7 B:ASP 276 : Charged B:SER 302 : HG : Orientation 2/7 Working on cluster #67... B:TYR 218 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: B:TYR 218 : HH : Default 1 1/2 Working on cluster #68... B:THR 232 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:THR 232 : HG1 : Stagger 2 3/4 Working on cluster #69... B:SER 240 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: B:SER 240 : HG : Orientation 1/9 Working on cluster #70... B:THR 244 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: B:THR 244 : HG1 : Stagger 3 6/6 Working on cluster #71... B:SER 248 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:SER 248 : HG : Stagger 1 5/7 Working on cluster #72... B:SER 253 : HG : 8 states B:GLU 256 : 3 states Scoring exhaustively (24 potential combinations)... Cluster results: B:SER 253 : HG : Stagger 3 8/8 B:GLU 256 : Charged Working on cluster #73... B:TYR 260 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 260 : HH : Default 2 3/3 Working on cluster #74... B:SER 263 : HG : 6 states B:SER 265 : HG : 7 states Scoring exhaustively (42 potential combinations)... Cluster results: B:SER 263 : HG : Orientation 1/6 B:SER 265 : HG : Stagger 2 6/7 Working on cluster #75... B:THR 270 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 270 : HG1 : Orientation 2/5 Working on cluster #76... B:CYS 286 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:CYS 286 : HG : Stagger 1 3/5 Working on cluster #77... B:THR 321 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: B:THR 321 : HG1 : Orientation 2/5 Working on cluster #78... B:TYR 322 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 322 : HH : Default 2 3/3 Working on cluster #79... B:THR 327 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:THR 327 : HG1 : Stagger 3 7/7 Working on cluster #80... B:THR 330 : HG1 : 11 states B:GLU 339 : 3 states Scoring exhaustively (33 potential combinations)... Cluster results: B:THR 330 : HG1 : Orientation 3/11 B:GLU 339 : Charged Working on cluster #81... B:SER 343 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:SER 343 : HG : Orientation 1/7 Working on cluster #82... B:CYS 363 : HG : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: B:CYS 363 : HG : Orientation 2/4 Working on cluster #83... B:TYR 367 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:TYR 367 : HH : Orientation 1/3 Working on cluster #84... B:SER 368 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: B:SER 368 : HG : Stagger 1 5/7 Working on cluster #85... C:THR 405 : HG1 : 6 states C:ASP 497 : 3 states Scoring exhaustively (18 potential combinations)... Cluster results: C:THR 405 : HG1 : Orientation 3/6 C:ASP 497 : Charged Working on cluster #86... C:THR 413 : HG1 : 8 states C:ASP 468 : 3 states C:SER 494 : HG : 8 states Scoring exhaustively (192 potential combinations)... Cluster results: C:THR 413 : HG1 : Orientation 1/8 C:ASP 468 : Charged C:SER 494 : HG : Orientation 5/8 Working on cluster #87... C:TYR 430 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 430 : HH : Default 2 3/3 Working on cluster #88... C:SER 445 : HG : 9 states Scoring exhaustively (9 potential combinations)... Cluster results: C:SER 445 : HG : Orientation 1/9 Working on cluster #89... C:TYR 452 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: C:TYR 452 : HH : Orientation 1/2 Working on cluster #90... C:THR 462 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: C:THR 462 : HG1 : Stagger 2 3/4 Working on cluster #91... C:CYS 478 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: C:CYS 478 : HG : Stagger 2 4/5 Working on cluster #92... C:THR 513 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: C:THR 513 : HG1 : Stagger 2 4/5 Working on cluster #93... C:TYR 514 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 514 : HH : Orientation 1/3 Working on cluster #94... C:THR 519 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:THR 519 : HG1 : Stagger 3 7/7 Working on cluster #95... C:THR 522 : HG1 : 9 states C:GLU 531 : 3 states Scoring exhaustively (27 potential combinations)... Cluster results: C:THR 522 : HG1 : Stagger 2 8/9 C:GLU 531 : Charged Working on cluster #96... C:SER 535 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: C:SER 535 : HG : Orientation 2/5 Working on cluster #97... C:TYR 546 : HH : 4 states C:GLU 503 : 3 states Scoring exhaustively (12 potential combinations)... Cluster results: C:TYR 546 : HH : Orientation 1/4 C:GLU 503 : Charged Working on cluster #98... C:TYR 574 : HH : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:TYR 574 : HH : Orientation 2/3 Working on cluster #99... C:SER 577 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: C:SER 577 : HG : Stagger 2 6/7 Working on cluster #100... D:THR 597 : HG1 : 9 states D:ASP 704 : 3 states Scoring exhaustively (27 potential combinations)... Cluster results: D:THR 597 : HG1 : Orientation 4/9 D:ASP 704 : Charged Working on cluster #101... D:SER 701 : HG : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: D:SER 701 : HG : Orientation 2/7 Working on cluster #102... D:THR 720 : HG1 : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: D:THR 720 : HG1 : Orientation 2/5 Working on cluster #103... D:TYR 721 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: D:TYR 721 : HH : Default 2 2/2 Working on cluster #104... D:THR 726 : HG1 : 7 states Scoring exhaustively (7 potential combinations)... Cluster results: D:THR 726 : HG1 : Stagger 3 7/7 Working on cluster #105... D:THR 729 : HG1 : 8 states D:GLU 738 : 3 states Scoring exhaustively (24 potential combinations)... Cluster results: D:THR 729 : HG1 : Orientation 2/8 D:GLU 738 : Charged Working on cluster #106... A:GLU 5 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 5 : Charged Working on cluster #107... A:GLU 18 : 3 states B:GLU 208 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:GLU 18 : Charged B:GLU 208 : Charged Working on cluster #108... A:ASP 30 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 30 : Charged Working on cluster #109... A:GLU 43 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 43 : Charged Working on cluster #110... A:ASP 61 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 61 : Charged Working on cluster #111... A:GLU 62 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 62 : Charged Working on cluster #112... A:GLU 70 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 70 : Charged Working on cluster #113... A:ASP 75 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 75 : Charged Working on cluster #114... A:ASP 76 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 76 : Charged Working on cluster #115... A:GLU 87 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 87 : Charged Working on cluster #116... A:ASP 117 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 117 : Charged Working on cluster #117... A:GLU 132 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 132 : Charged Working on cluster #118... A:ASP 141 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 141 : Charged Working on cluster #119... A:ASP 149 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 149 : Charged Working on cluster #120... A:ASP 150 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 150 : Charged Working on cluster #121... A:GLU 158 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 158 : Charged Working on cluster #122... A:GLU 181 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 181 : Charged Working on cluster #123... A:GLU 182 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 182 : Charged Working on cluster #124... B:GLU 195 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 195 : Charged Working on cluster #125... B:ASP 220 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 220 : Charged Working on cluster #126... B:GLU 250 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 250 : Charged Working on cluster #127... B:GLU 252 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 252 : Charged Working on cluster #128... B:ASP 268 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 268 : Charged Working on cluster #129... B:GLU 269 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 269 : Charged Working on cluster #130... B:ASP 282 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 282 : Charged Working on cluster #131... B:ASP 283 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 283 : Charged Working on cluster #132... B:GLU 287 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 287 : Charged Working on cluster #133... B:GLU 294 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 294 : Charged Working on cluster #134... B:ASP 305 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 305 : Charged Working on cluster #135... B:GLU 311 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 311 : Charged Working on cluster #136... B:ASP 324 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:ASP 324 : Charged Working on cluster #137... B:GLU 335 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 335 : Charged Working on cluster #138... B:GLU 365 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: B:GLU 365 : Charged Working on cluster #139... C:GLU 402 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 402 : Charged Working on cluster #140... C:GLU 415 : 3 states D:GLU 607 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: C:GLU 415 : Charged D:GLU 607 : Charged Working on cluster #141... C:GLU 444 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 444 : Charged Working on cluster #142... C:GLU 448 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 448 : Charged Working on cluster #143... C:ASP 460 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 460 : Charged Working on cluster #144... C:GLU 461 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 461 : Charged Working on cluster #145... C:GLU 469 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 469 : Charged Working on cluster #146... C:ASP 474 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 474 : Charged Working on cluster #147... C:ASP 475 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 475 : Charged Working on cluster #148... C:GLU 486 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 486 : Charged Working on cluster #149... C:ASP 516 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:ASP 516 : Charged Working on cluster #150... C:GLU 580 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 580 : Charged Working on cluster #151... C:GLU 581 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: C:GLU 581 : Charged Working on cluster #152... D:GLU 594 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:GLU 594 : Charged Working on cluster #153... D:ASP 723 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: D:ASP 723 : Charged Total score for structure: -204.363296149 Structure extracted from file: rec-protassign.mae Output structure will be written to: rec-protassign-out.mae Complete. Output file: rec-protassign-out.mae