usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -11.1227 36.3192 16.9598 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 397 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 331 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 307 Number of spheres polar: 103, nonpolar: 90, out of current total: 307 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.72909 -1.29308 28.60176 41.72338 7.20543 26.81143 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 197 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 172 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 161 Spheres center of coords (x y z): -10.323080621118 35.5004721118012 17.7608472670807 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83717670659094 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 25 Final number of spheres that are from crystallographic ligand: 10