Distance from surface specified: 1.80 There are 33 ligand heavy atoms Ligand center of coords (x y z): 38.561303030303 55.7894848484849 34.624303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12549 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10956 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10780 Number of spheres polar: 6171, nonpolar: 3841, out of current total: 10780 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.64860 52.34200 41.79480 69.77900 20.62680 48.62080 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1324 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 755 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 732 Spheres center of coords (x y z): 42.6909112021858 56.632075136612 34.182018579235 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.7255326766404 Final number of output spheres is: 200 Number of polar spheres: 124 Number of nonpolar spheres: 70 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33