There are 33 ligand heavy atoms Ligand center of coords (x y z): 38.561303030303 55.7894848484849 34.624303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12549 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8722 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8722 Number of spheres polar: 5164, nonpolar: 3070, out of current total: 8722 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.57360 50.54140 43.81680 67.78120 22.62540 46.62240 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1104 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 609 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 549 Spheres center of coords (x y z): 43.8282706739526 56.6142710382514 33.1100695810565 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.24325172936889 Final number of output spheres is: 120 Number of polar spheres: 61 Number of nonpolar spheres: 58 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33