usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 18.6753555555556 19.2273333333333 15.7625555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 766 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 372 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 372 Number of spheres polar: 92, nonpolar: 175, out of current total: 372 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.71450 28.59231 9.95434 29.21148 9.03209 21.20253 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 173 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 136 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): 18.5524602307692 20.7027657692308 15.2345537692308 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.2509850770537 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 45