usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 62.4681395348837 25.4049534883721 34.1475581395349 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 833 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 513 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 513 Number of spheres polar: 198, nonpolar: 204, out of current total: 513 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 52.49940 72.42500 15.43326 34.97200 24.20216 44.08343 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 298 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 263 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 63.3991488832487 25.0028430964467 33.8407518781726 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.87206547621229 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 43