usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 25.2725714285714 39.4028285714286 83.9281428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1428 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 809 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 807 Number of spheres polar: 202, nonpolar: 353, out of current total: 807 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.32571 35.25027 29.40834 49.21512 73.95742 93.92743 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 25.197733963964 41.1086811711712 86.1074975675675 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.58773917286306 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 35