usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 23.5534761904762 37.2514761904762 84.2959047619048 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1223 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 698 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 698 Number of spheres polar: 214, nonpolar: 314, out of current total: 698 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.03587 33.54267 27.26295 47.23014 74.31380 93.92725 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 252 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 200 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 171 Spheres center of coords (x y z): 24.4158399415205 40.4506685964912 86.3711117543859 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29497446123225 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 21