usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 21.8159142857143 14.4222857142857 14.6144 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1510 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 884 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 882 Number of spheres polar: 182, nonpolar: 486, out of current total: 882 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.86244 31.79312 4.47330 24.39502 4.71341 24.53254 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 311 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 265 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 238 Spheres center of coords (x y z): 22.3071396218488 16.3901733193277 12.6920130672269 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18805181494076 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 35